CD00078

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD00078

CD00078

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Paxip1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• PAX interacting (with transcription-activation domain) protein 1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• PAX interacting (with transcription-activation domain) protein 1
• Pax transcription activation domain interacting protein
• PAX-interacting protein 1
• PAX transactivation activation domain-interacting protein

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

• PTIP
• D5Ertd149e

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/55982

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• PAX interacting (with transcription-activation domain) protein 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:1890430

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_018878

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000002221

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.277190
• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.409895

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=608254

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Eun Ah. Cho, et.al., BRCT domain-containing protein PTIP is essential for progression through mitosis., Molecular and cellular biology, 2003, 23
  http://rdf.ncbi.nlm.nih.gov/pubmed/12588986
• Doug. Stryke, et.al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells., Nucleic acids research, 2003, 31
  http://rdf.ncbi.nlm.nih.gov/pubmed/12520002
• Jeremy A. Daniel, et.al., PTIP promotes chromatin changes critical for immunoglobulin class switch recombination., Science (New York, N.Y.), 2010, 329
  http://rdf.ncbi.nlm.nih.gov/pubmed/20671152
• Pengfei. Wang, et.al., Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II., Molecular and cellular biology, 2009, 29
  http://rdf.ncbi.nlm.nih.gov/pubmed/19703992
• M S. Lechner, et.al., PTIP, a novel BRCT domain-containing protein interacts with Pax2 and is associated with active chromatin., Nucleic acids research, 2000, 28
  http://rdf.ncbi.nlm.nih.gov/pubmed/10908331
• Young-Wook. Cho, et.al., Histone methylation regulator PTIP is required for PPARgamma and C/EBPalpha expression and adipogenesis., Cell metabolism, 2009, 10
  http://rdf.ncbi.nlm.nih.gov/pubmed/19583951
• Albrecht. Hoffmeister, et.al., The HMG-I/Y-related protein p8 binds to p300 and Pax2 trans-activation domain-interacting protein to regulate the trans-activation activity of the Pax2A and Pax2B transcription factors on the glucagon gene promoter., The Journal of biological chemistry, 2002, 277
  http://rdf.ncbi.nlm.nih.gov/pubmed/11940591
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• Gaelle M. Lefevre, et.al., Altering a histone H3K4 methylation pathway in glomerular podocytes promotes a chronic disease phenotype., PLoS genetics, 2010, 6
  http://rdf.ncbi.nlm.nih.gov/pubmed/21060806
• Lindsay F. Fowles, et.al., Genomic screen for genes involved in mammalian craniofacial development., Genesis (New York, N.Y. : 2000), 2003, 35
  http://rdf.ncbi.nlm.nih.gov/pubmed/12533789

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• adipose tissue development
  http://purl.obolibrary.org/obo/GO_0060612
• chorion development
  http://purl.obolibrary.org/obo/GO_0060717
• DNA damage response, signal transduction by p53 class mediator
  http://purl.obolibrary.org/obo/GO_0030330
• intracellular
  http://purl.obolibrary.org/obo/GO_0005622
• positive regulation of transcription initiation from RNA polymerase II promoter
  http://purl.obolibrary.org/obo/GO_0060261
• positive regulation of isotype switching
  http://purl.obolibrary.org/obo/GO_0045830
• DNA recombination
  http://purl.obolibrary.org/obo/GO_0006310
• positive regulation of histone H3-K36 methylation
  http://purl.obolibrary.org/obo/GO_0000416
• positive regulation of histone acetylation
  http://purl.obolibrary.org/obo/GO_0035066
• positive regulation of protein ubiquitination
  http://purl.obolibrary.org/obo/GO_0031398
• transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006351
• positive regulation of histone H3-K4 methylation
  http://purl.obolibrary.org/obo/GO_0051571
• response to ionizing radiation
  http://purl.obolibrary.org/obo/GO_0010212
• protein binding
  http://purl.obolibrary.org/obo/GO_0005515
• histone methyltransferase complex
  http://purl.obolibrary.org/obo/GO_0035097
• cellular response to DNA damage stimulus
  http://purl.obolibrary.org/obo/GO_0006974
• regulation of transcription, DNA-templated
  http://purl.obolibrary.org/obo/GO_0006355
• DNA repair
  http://purl.obolibrary.org/obo/GO_0006281
• vasculogenesis
  http://purl.obolibrary.org/obo/GO_0001570
• histone H3-K4 methylation
  http://purl.obolibrary.org/obo/GO_0051568
• endothelial cell migration
  http://purl.obolibrary.org/obo/GO_0043542
• nucleus
  http://purl.obolibrary.org/obo/GO_0005634

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName