CD19728

http://metadb.riken.jp/db/BrainTx/TranscriptomeData/CD19728

CD19728

トランスクリプトームデータ

遺伝子シンボル

http://metadb.riken.jp/db/BrainTx/geneSymbol

• Col13a1

遺伝子名

http://metadb.riken.jp/db/BrainTx/geneName

• collagen, type XIII, alpha 1

別名

http://metadb.riken.jp/db/BrainTx/alt_name

• procollagen, type XIII, alpha 1
• collagen alpha-1(XIII) chain
• type XIII collagen
• collagen, type XIII, alpha 1

別名略称

http://metadb.riken.jp/db/BrainTx/alt_symbol

NCBI遺伝子

http://metadb.riken.jp/db/BrainTx/NCBIGene

• https://www.ncbi.nlm.nih.gov/gene/12817

MGI遺伝子

http://metadb.riken.jp/db/BrainTx/mgiGene

• collagen, type XIII, alpha 1
  http://metadb.riken.jp/db/mgi_rdf/MGI:1277201

BrainTx遺伝子

http://metadb.riken.jp/db/BrainTx/brainTxGene

脳発現画像

http://metadb.riken.jp/db/BrainTx/brainExpressionImage

時系列発現 (小脳)

http://metadb.riken.jp/db/BrainTx/brainExpression

脳発現特異性/組織別発現

http://metadb.riken.jp/db/BrainTx/brainSpecificity

BrainTx遺伝子カテゴリー

http://metadb.riken.jp/db/BrainTx/brainTxGeneCategory

NCBI Accession Number

http://metadb.riken.jp/db/BrainTx/NCBIAccessionNumber

• https://www.ncbi.nlm.nih.gov/nuccore/NM_007731

Ensembl 遺伝子

http://metadb.riken.jp/db/BrainTx/ensemblGene

• http://asia.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000058806

UniGene 遺伝子

http://metadb.riken.jp/db/BrainTx/uniGene

• https://www.ncbi.nlm.nih.gov/unigene/?term=Mm.300931

OMIM ID

http://metadb.riken.jp/db/BrainTx/omim

• https://www.omim.org/entry/603434?search=603434&highlight=120350

PubMed ID (PMID)

http://rdf.ncbi.nlm.nih.gov/pubmed/

• Jenni. Tahkola, et.al., Cardiac dysfunction in transgenic mouse fetuses overexpressing shortened type XIII collagen., Cell and tissue research, 2008, 333
  http://rdf.ncbi.nlm.nih.gov/pubmed/18481090
• R. Sallinen, et.al., Physical mapping of mouse collagen genes on chromosome 10 by high-resolution FISH., Mammalian genome : official journal of the International Mammalian Genome Society, 2001, 12
  http://rdf.ncbi.nlm.nih.gov/pubmed/11331940
• Jameel. Dennis, et.al., Collagen XIII induced in vascular endothelium mediates alpha1beta1 integrin-dependent transmigration of monocytes in renal fibrosis., The American journal of pathology, 2010, 177
  http://rdf.ncbi.nlm.nih.gov/pubmed/20864678
• P. Hägg, et.al., Type XIII collagen is identified as a plasma membrane protein., The Journal of biological chemistry, 1998, 273
  http://rdf.ncbi.nlm.nih.gov/pubmed/9624150
• S. Peltonen, et.al., Alternative splicing of mouse alpha1(XIII) collagen RNAs results in at least 17 different transcripts, predicting alpha1(XIII) collagen chains with length varying between 651 and 710 amino acid residues., DNA and cell biology, 1997, 16
  http://rdf.ncbi.nlm.nih.gov/pubmed/9052743
• Jayashree. Desai, et.al., Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects., Human molecular genetics, 2006, 15
  http://rdf.ncbi.nlm.nih.gov/pubmed/16537572
• Anne. Latvanlehto, et.al., Muscle-derived collagen XIII regulates maturation of the skeletal neuromuscular junction., The Journal of neuroscience : the official journal of the Society for Neuroscience, 2010, 30
  http://rdf.ncbi.nlm.nih.gov/pubmed/20844119
• A P. Kvist, et.al., Complete exon-intron organization and chromosomal location of the gene for mouse type XIII collagen (col13a1) and comparison with its human homologue., Matrix biology : journal of the International Society for Matrix Biology, 1999, 18
  http://rdf.ncbi.nlm.nih.gov/pubmed/10429945
• Graciana. Diez-Roux, et.al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo., PLoS biology, 2011, 9
  http://rdf.ncbi.nlm.nih.gov/pubmed/21267068
• M. Mrug, et.al., Mapping of mouse alpha 1(XIII) collagen to chromosome 10 and its exclusion as a kd candidate gene., Biochemical genetics, 2000, 38
  http://rdf.ncbi.nlm.nih.gov/pubmed/11129527

Gene Ontology

http://metadb.riken.jp/db/BrainTx/golink

• cell-matrix adhesion
  http://purl.obolibrary.org/obo/GO_0007160
• cell adhesion
  http://purl.obolibrary.org/obo/GO_0007155
• ossification
  http://purl.obolibrary.org/obo/GO_0001503
• heparin binding
  http://purl.obolibrary.org/obo/GO_0008201
• collagen
  http://purl.obolibrary.org/obo/GO_0005202
• cell-cell junction
  http://purl.obolibrary.org/obo/GO_0005911
• cell differentiation
  http://purl.obolibrary.org/obo/GO_0030154
• plasma membrane
  http://purl.obolibrary.org/obo/GO_0005886
• integral component of membrane
  http://purl.obolibrary.org/obo/GO_0016021
• membrane
  http://purl.obolibrary.org/obo/GO_0016020

InterPro ID

http://metadb.riken.jp/db/BrainTx/interPro

KEGG Pathway ID

http://metadb.riken.jp/db/BrainTx/keggPathwayID

KEGG Pathway 名称

http://metadb.riken.jp/db/BrainTx/keggPathwayName