IMPC RDF data 統計解析結果（定量値）

undimensional_110521
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_110521

undimensional_110521(統計解析結果（定量値）)

URI表示モード

undimensional_110521

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_48818
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48818

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_40332
http://metadb.riken.jp/db/IMPC_RDF/Cohort/40332

project http://purl.org/dc/elements/1.1/contributor

IMPC
http://metadb.riken.jp/db/IMPC_RDF/project/4

organization http://purl.org/dc/elements/1.1/publisher

Medical Research Council centre for mouse genetics
http://metadb.riken.jp/db/IMPC_RDF/Organization/7

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

Harwell
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/HRWL_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Combined SHIRPA and Dysmorphology
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_CSD_003

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Locomotor activity
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_CSD_032_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/H-EOMES-G05-TM1B

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

IMPC_CSD_032_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

hyperactivity
http://purl.obolibrary.org/obo/MP_0001399

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

hypoactivity
http://purl.obolibrary.org/obo/MP_0001402

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

2271

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

8

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

2246

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

8

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

22.273374888691

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

21.1571994715984

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

19.25

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

23.75

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

c0d04946009ff863da92165975d6bed3

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withoutWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.0173937914288734

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: -18.94%, Male: 11.19%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

-1.05068211111172

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.154397144523177

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

1.16143036649466e-11

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

3.89594070848106e-08

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

H-EOMES-G05-TM1B

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.331238822847519

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.339825042505589

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

5.66840164593722e-08

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

22.2807475291928

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.121626449422105

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.0057996158112148

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

-4.1117327320664

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

1.79082985079951

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.0217281108173145

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

2.429356798982
1.92889292713281

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

2.429356798982
1.92889292713281

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.207939464726342

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - females only

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information