IMPC RDF data 統計解析結果（定量値）

undimensional_111351
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_111351

undimensional_111351(統計解析結果（定量値）)

URI表示モード

undimensional_111351

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_48818
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48818

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_39724
http://metadb.riken.jp/db/IMPC_RDF/Cohort/39724

project http://purl.org/dc/elements/1.1/contributor

IMPC
http://metadb.riken.jp/db/IMPC_RDF/project/4

organization http://purl.org/dc/elements/1.1/publisher

Medical Research Council centre for mouse genetics
http://metadb.riken.jp/db/IMPC_RDF/Organization/7

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

Harwell
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/HRWL_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Body Composition (DEXA lean/fat)
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_DXA_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Bone Mineral Density (excluding skull)
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_DXA_004_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/H-ATP1A4-F02-TM1B

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

IMPC_DXA_004_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

decreased bone mineral density
http://purl.obolibrary.org/obo/MP_0000063

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

decreased bone mineral density
http://purl.obolibrary.org/obo/MP_0000063

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

decreased bone mineral density
http://purl.obolibrary.org/obo/MP_0000063

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

1818

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

8

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

1788

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

8

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

0.0544862975391499

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

0.0552984598459846

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

0.055025

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

0.052725

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

1f0313a8a852318ae73c07c4d6ff42e0

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withoutWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.0296770375509698

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: -1.04%, Male: -6.15%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

0.000892748060841592

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.00011460664679949

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

9.13019880406532e-15

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

2.71395846253905e-08

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

H-ATP1A4-F02-TM1B

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.506207756023132

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

5.48345428270751e-05

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

3.91324629185634e-09

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

0.0546681760756614

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.000115801584318773

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.0498931788941819

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

-0.000568992531576848

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

0.00147833599986234

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.700347782975259

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

-0.00337407688030583
0.00136701195418616

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

-0.00337407688030583
0.00136701195418616

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.0136332561238362

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - males only

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information