undimensional_142810

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_142810

undimensional_142810

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_38010
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/38010

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_38426
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/38426

project

http://purl.org/dc/elements/1.1/contributor

• MGP
  http://metadb.riken.jp/db/IMPC_RDF/project/8

organization

http://purl.org/dc/elements/1.1/publisher

• Wellcome Trust Sanger Institute
  http://metadb.riken.jp/db/IMPC_RDF/Organization/3

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• MGP Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/M-G-P_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Grip Strength
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/M-G-P_009_001

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Body weight
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/M-G-P_009_001_003

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0025_4_H04

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• M-G-P_009_001_003

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• decreased body weight
  http://purl.obolibrary.org/obo/MP_0001262

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• increased body weight
  http://purl.obolibrary.org/obo/MP_0001260

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 392

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 7

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 387

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 7

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 25.1976744186047

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 32.0994897959184

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 26.5428571428571

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 29.9285714285714

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• d41d8cd98f00b204e9800998ecf8427e

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 1

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.121341912660174

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: 4.38%, Male: -7%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 6.90282731691749

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 0.215954095992329

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 8.53241059597786e-140

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 0.0761962383786489

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• EPD0025_4_H04

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.599712555083269

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.242359168901169

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 0.0637959161568909

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 25.160527072952

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 0.211208670284592

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0433226065637925

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• 1.25522146215998

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 1.41363922068218

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.374874494508358

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 1.41362465404765
• -2.00767435355298

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 1.41362465404765
• -2.00767435355298

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.155977388675032

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - can not classify effect

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information