undimensional_14751

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_14751

undimensional_14751

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_48818
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/48818

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_37912
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/37912

project

http://purl.org/dc/elements/1.1/contributor

• EUMODIC
  http://metadb.riken.jp/db/IMPC_RDF/project/1

organization

http://purl.org/dc/elements/1.1/publisher

• Medical Research Council centre for mouse genetics
  http://metadb.riken.jp/db/IMPC_RDF/Organization/7

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• EUMODIC Pipeline 1
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/ESLIM_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Body Weight
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/ESLIM_022_001

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Acoustic Startle & PPI Body Weight
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/ESLIM_022_001_711

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0143_2_C03

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• ESLIM_022_001_711

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

• decreased body weight
  http://purl.obolibrary.org/obo/MP_0001262

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• decreased body weight
  http://purl.obolibrary.org/obo/MP_0001262

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased body weight
  http://purl.obolibrary.org/obo/MP_0001262

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 266

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 12

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 166

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 10

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 22.3457831325301

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 27.0961278195489

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 21.454

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 23.6283333333333

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• 6e1f5ed01a2b273f431c93f7b7dcd07d

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 1

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 1.83774633058521e-07

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -5.41%, Male: -14.01%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 4.70821376433418

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 0.253775173223834

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 9.41181083560007e-55

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 0.188174364071166

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• EPD0143_2_C03

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.959373930655139

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.14886341866601

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 0.205036061147484

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 22.3749948607152

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 0.212169309264656

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0142653958604706

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -1.35995712396014

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 0.644621550340991

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.0355572291575202

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• -3.5223585680366
• 0.651729305718203

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• -3.5223585680366
• 0.651729305718203

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 1.16781041037919e-07

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - different size as males greater

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information