undimensional_189828

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_189828

undimensional_189828

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_39069
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/39069

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_46397
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/46397

project

http://purl.org/dc/elements/1.1/contributor

• IMPC
  http://metadb.riken.jp/db/IMPC_RDF/project/4

organization

http://purl.org/dc/elements/1.1/publisher

• The Centre for Phenogenomics
  http://metadb.riken.jp/db/IMPC_RDF/Organization/27

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• TCP Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/TCP_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Clinical Chemistry
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_CBC_003

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Aspartate aminotransferase
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_CBC_012_001

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/TCPA0049Cre

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• IMPC_CBC_012_001

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• increased circulating aspartate transaminase level
  http://purl.obolibrary.org/obo/MP_0005343

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased circulating aspartate transaminase level
  http://purl.obolibrary.org/obo/MP_0005632

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 79

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 7

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 76

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 7

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 56.5171052631579

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 60.1291139240506

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 49.5714285714286

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 75.4285714285714

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• b1a123c9c23460979945bc3215413bde

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, generalized least squares, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_generalized_least_squares_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 0

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 0

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.0486892213793163

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -11.83%, Male: 26.06%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 3.61200866089274

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 4.66132429069797

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 0.439514333329429

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 7.37e-10

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• TCPA0049Cre

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.907084941003672

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 56.5171052631579

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 3.32779844622782

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0217428536128892

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -6.94567669172932

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 6.8048167953503

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.308890804316059

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 15.2994575045208
• 6.77384608357024

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 15.2994575045208
• 6.77384608357024

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.0252177057809437

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - males only

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information