undimensional_198501

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_198501

undimensional_198501

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_44388
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/44388

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_41959
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/41959

project

http://purl.org/dc/elements/1.1/contributor

• IMPC
  http://metadb.riken.jp/db/IMPC_RDF/project/4

organization

http://purl.org/dc/elements/1.1/publisher

• Jackson Laboratory
  http://metadb.riken.jp/db/IMPC_RDF/Organization/6

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• JAX Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/JAX_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Plasma Chemistry
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/JAX_PLC_001

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Total cholesterol
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/JAX_PLC_001_001

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/JR18631

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• JAX_PLC_001_001

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

• decreased circulating cholesterol level
  http://purl.obolibrary.org/obo/MP_0005179

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• decreased circulating cholesterol level
  http://purl.obolibrary.org/obo/MP_0005179

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased circulating cholesterol level
  http://purl.obolibrary.org/obo/MP_0005179

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 292

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 8

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 296

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 8

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 88.6283783783784

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 108.041095890411

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 83.875

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 84

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• 38fdb9a06b613abf544ca787876bc201

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 1

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 3.29552353524136e-05

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -6.75%, Male: -28.06%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 11.5964534524263

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 1.4108194889767

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 1.50847484741627e-15

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

• 1.92200903961684

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

• 0.281103126664951

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

• 2.17683693149683e-11

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 0.00607940324859889

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• JR18631

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.00589418856590906

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.949772719234788

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 0.00085189394128523

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 49.0346151776253

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 5.79106041009852

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 6.00154744073711e-05

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -6.60533760566287

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 8.42377500550232

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.433305549580217

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 8.4400523291902
• -27.468207727917

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 8.4400523291902
• -27.468207727917

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.00120660898041785

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - males only

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information