IMPC RDF data 統計解析結果（定量値）

undimensional_234501
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_234501

undimensional_234501(統計解析結果（定量値）)

URI表示モード

undimensional_234501

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_48016
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48016

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_48197
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48197

project http://purl.org/dc/elements/1.1/contributor

MGP
http://metadb.riken.jp/db/IMPC_RDF/project/8

organization http://purl.org/dc/elements/1.1/publisher

Wellcome Trust Sanger Institute
http://metadb.riken.jp/db/IMPC_RDF/Organization/3

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

MGP Pipeline
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/M-G-P_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Dexa-scan analysis
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/M-G-P_005_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Bone Mineral Content
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/M-G-P_005_001_005

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0117_4_C07

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

M-G-P_005_001_005

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

decreased bone mineral content
http://purl.obolibrary.org/obo/MP_0010124

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

245

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

5

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

217

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

5

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

0.448883410138249

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

0.488031020408163

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

0.40432

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

0.50244

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

d41d8cd98f00b204e9800998ecf8427e

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withoutWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.139650015168554

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

-0.0261608957608905

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

0.0173548940535838

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

0.132491687930038

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: -5.57%, Male: -5.57%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

0.0385444917122123

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.00421909892592712

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

3.23009490050479e-18

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

0.722204710950865

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

EPD0117_4_C07

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.0512680828259957

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.24432099695066

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

0.74876011189349

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

0.449229040762572

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.00389777728604181

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

0

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.0967391231330186

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - both sexes equally

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information