IMPC RDF data 統計解析結果（定量値）

undimensional_234907
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_234907

undimensional_234907(統計解析結果（定量値）)

URI表示モード

undimensional_234907

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_48016
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48016

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_48219
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48219

project http://purl.org/dc/elements/1.1/contributor

MGP
http://metadb.riken.jp/db/IMPC_RDF/project/8

organization http://purl.org/dc/elements/1.1/publisher

Wellcome Trust Sanger Institute
http://metadb.riken.jp/db/IMPC_RDF/Organization/3

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

MGP Pipeline
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/M-G-P_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Dexa-scan analysis
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/M-G-P_005_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Lean Mass
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/M-G-P_005_001_003

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0142_2_E04

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

M-G-P_005_001_003

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

decreased lean body mass
http://purl.obolibrary.org/obo/MP_0003961

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

245

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

6

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

217

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

7

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

18.6858064516129

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

21.7464081632653

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

19.1314285714286

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

21.0266666666667

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

d41d8cd98f00b204e9800998ecf8427e

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withoutWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.575691567065409

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

-0.295194214446896

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

0.52122002091698

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

0.571470273651255

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: -1.45%, Male: -1.45%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

3.06796344939944

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.138385597016128

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

1.01963794945697e-71

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

0.0193891243717872

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

EPD0142_2_E04

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.61451151690853

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.783658138435349

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

0.0317769054595708

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

18.6855959140861

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.136814591093267

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

0

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.20513960378546

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - both sexes equally

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information