IMPC RDF data 統計解析結果（定量値）

undimensional_255866
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_255866

undimensional_255866(統計解析結果（定量値）)

URI表示モード

undimensional_255866

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_47994
http://metadb.riken.jp/db/IMPC_RDF/Cohort/47994

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_46805
http://metadb.riken.jp/db/IMPC_RDF/Cohort/46805

project http://purl.org/dc/elements/1.1/contributor

IMPC
http://metadb.riken.jp/db/IMPC_RDF/project/4

organization http://purl.org/dc/elements/1.1/publisher

Institut Clinique de la Souris
http://metadb.riken.jp/db/IMPC_RDF/Organization/8

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

ICS
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/ICS_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Hematology
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_HEM_002

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Neutrophil differential count
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_HEM_029_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/IP00005240a

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

IMPC_HEM_029_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

decreased neutrophil cell number
http://purl.obolibrary.org/obo/MP_0000222

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

increased neutrophil cell number
http://purl.obolibrary.org/obo/MP_0000219

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

595

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

7

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

570

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

4

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

8.45754385964912

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

8.84420168067227

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

10.475

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

7.58571428571429

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

d2994c8e43fbc4e9bf294669bdc46715

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withoutWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

0

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.0170118011705055

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: 33.41%, Male: -4.26%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

0.370930627637001

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.234802215656605

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

0.114453009088536

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

7.37e-10

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

IP00005240a

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.14278994085946

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.379589920210791

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

7.37e-10

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

8.48762135988554

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.214976732821083

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.0062819310783464

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

2.89142466485466

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

1.18187518437613

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.0145836488983677

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

1.05437583848994
-0.36879167706806

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

1.05437583848994
-0.36879167706806

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.726577128387882

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - females only

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information