undimensional_309045

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_309045

undimensional_309045

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_39069
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/39069

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_46270
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/46270

project

http://purl.org/dc/elements/1.1/contributor

• IMPC
  http://metadb.riken.jp/db/IMPC_RDF/project/4

organization

http://purl.org/dc/elements/1.1/publisher

• University of California at Davis School of Veterinary Medicine
  http://metadb.riken.jp/db/IMPC_RDF/Organization/2

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• UCD Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/UCD_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Clinical Chemistry
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_CBC_003

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Total cholesterol
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_CBC_015_001

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/CR1673

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• IMPC_CBC_015_001

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• increased circulating cholesterol level
  http://purl.obolibrary.org/obo/MP_0005178

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased circulating cholesterol level
  http://purl.obolibrary.org/obo/MP_0005179

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 496

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 8

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 484

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 8

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 113.337665289256

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 160.370221774194

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 113.48625

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 188.66375

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• fa0ed3d6f98ccd5747fb841c1b292956

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 1

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.0674739772864641

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -5.75%, Male: 15.78%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 46.6330095774083

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 1.7096444988771

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 4.50818689371769e-120

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 1.96001386161838e-08

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• CR1673

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.171446030179296

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.00142584106133862

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 7.02690189197202e-09

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 114.880073471197

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 1.75314565504752

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0340557077587338

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -7.89183283156663

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 10.1393439233943

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.436573221651765

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 10.1427737179952
• 21.6795193463072

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 10.1427737179952
• 21.6795193463072

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.0328297668600718

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - males only

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information