undimensional_328740

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_328740

undimensional_328740

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_48008
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/48008

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_48169
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/48169

project

http://purl.org/dc/elements/1.1/contributor

• MGP
  http://metadb.riken.jp/db/IMPC_RDF/project/8

organization

http://purl.org/dc/elements/1.1/publisher

• Wellcome Trust Sanger Institute
  http://metadb.riken.jp/db/IMPC_RDF/Organization/3

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• MGP Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/M-G-P_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Dexa-scan analysis
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/M-G-P_005_001

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Bone Mineral Content
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/M-G-P_005_001_005

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0039_1_C08

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• M-G-P_005_001_005

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• increased bone mineral content
  http://purl.obolibrary.org/obo/MP_0010123

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased bone mineral content
  http://purl.obolibrary.org/obo/MP_0010124

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 233

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 7

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 198

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 7

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 0.459324242424242

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 0.503395708154506

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 0.437714285714286

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 0.541771428571429

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• d41d8cd98f00b204e9800998ecf8427e

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 0

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.00881031515314897

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -5.82%, Male: 8.06%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 0.0437367360718158

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 0.0044569227847596

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 2.31503510007365e-20

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 0.487798583687831

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• EPD0039_1_C08

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.187143118454049

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.0476904088352378

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 0.397573514629917

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 0.459065941043929

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 0.00382970286381884

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0039084025225562

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -0.0281263211081173

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 0.011835516018727

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.0179876980173238

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.0389687514556842
• 0.0191908130452534

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.0389687514556842
• 0.0191908130452534

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.0460965907039109

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - different direction for the sexes

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information