IMPC RDF data 統計解析結果（定量値）

undimensional_365829
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_365829

undimensional_365829(統計解析結果（定量値）)

URI表示モード

undimensional_365829

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_44388
http://metadb.riken.jp/db/IMPC_RDF/Cohort/44388

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_47961
http://metadb.riken.jp/db/IMPC_RDF/Cohort/47961

project http://purl.org/dc/elements/1.1/contributor

IMPC
http://metadb.riken.jp/db/IMPC_RDF/project/4

organization http://purl.org/dc/elements/1.1/publisher

Jackson Laboratory
http://metadb.riken.jp/db/IMPC_RDF/Organization/6

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

JAX Pipeline
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/JAX_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Body Composition (DEXA lean/fat)
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_DXA_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

BMC/Body weight
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_DXA_007_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/JR31505

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

IMPC_DXA_007_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

decreased bone mineral content
http://purl.obolibrary.org/obo/MP_0010124

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

increased bone mineral content
http://purl.obolibrary.org/obo/MP_0010123

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

1553

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

8

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

1590

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

8

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

0.0189263357232704

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

0.0162094376046362

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

0.020696625

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

0.0153113375

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

1f0313a8a852318ae73c07c4d6ff42e0

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withoutWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.000906588716859377

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: 8.18%, Male: -6.83%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

-0.00271215063586977

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

4.75831641819841e-05

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

0

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

0.141622842705538

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

JR31505

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.894207896123856

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.0716876918240438

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

0.510982564457592

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

0.0189468097468262

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

4.80662736909866e-05

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.000192939279491711

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

0.00143849942601982

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

0.000532563056924576

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.00695167694634426

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

0.000533131777910839
-0.00120098786075654

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

0.000533131777910839
-0.00120098786075654

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.0243526190093848

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - different direction for the sexes

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information