undimensional_391875

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_391875

undimensional_391875

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_39069
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/39069

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_43713
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/43713

project

http://purl.org/dc/elements/1.1/contributor

• IMPC
  http://metadb.riken.jp/db/IMPC_RDF/project/4

organization

http://purl.org/dc/elements/1.1/publisher

• The Centre for Phenogenomics
  http://metadb.riken.jp/db/IMPC_RDF/Organization/27

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• TCP Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/TCP_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Challenge Whole Body Plethysmography
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/TCP_CHL_003

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Body weight
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/TCP_CHL_043_001

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/BL2338_TCP

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• TCP_CHL_043_001

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• increased body weight
  http://purl.obolibrary.org/obo/MP_0001260

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased body weight
  http://purl.obolibrary.org/obo/MP_0001262

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 102

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 6

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 106

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 6

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 20.5284905660377

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 25.3936274509804

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 20.3783333333333

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 27.0666666666667

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• 2eeb0d6b22a14bdd720323f39a857abc

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 1

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.116409048982619

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -4.05%, Male: 3.69%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 4.91242655741646

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 0.22072647964951

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 1.50888745280025e-41

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 0.0324180408696255

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• BL2338_TCP

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.254160821426983

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.0217972419485555

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 0.00514907303175645

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 20.5143720161358

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 0.174551189599795

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0407762982290931

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -0.92977615295219

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 0.773822127811864

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.23224596529979

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.774245724652177
• 0.846130622964685

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.774245724652177
• 0.846130622964685

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.276962844391734

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - can not classify effect

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information