IMPC RDF data 統計解析結果（定量値）

undimensional_402464
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_402464

undimensional_402464(統計解析結果（定量値）)

URI表示モード

undimensional_402464

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_48008
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48008

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_48391
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48391

project http://purl.org/dc/elements/1.1/contributor

MGP
http://metadb.riken.jp/db/IMPC_RDF/project/8

organization http://purl.org/dc/elements/1.1/publisher

Wellcome Trust Sanger Institute
http://metadb.riken.jp/db/IMPC_RDF/Organization/3

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

MGP Pipeline
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/M-G-P_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Body Weight
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/M-G-P_022_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Body Weight
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/M-G-P_022_001_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0046_1_C10

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

M-G-P_022_001_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

decreased body weight
http://purl.obolibrary.org/obo/MP_0001262

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

decreased body weight
http://purl.obolibrary.org/obo/MP_0001262

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

decreased body weight
http://purl.obolibrary.org/obo/MP_0001262

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

1115

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

12

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

991

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

26

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

19.3188698284561

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

23.0587623318386

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

14.6576923076923

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

19.3583333333333

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

d41d8cd98f00b204e9800998ecf8427e

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withoutWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

0

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.000190214627918178

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: -22.91%, Male: -9.3%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

3.37733072463983

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.234476189606677

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

1.09169312393318e-44

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

7.37e-10

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

EPD0046_1_C10

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.696696404565238

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

9.28712576309354e-06

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

5.14178941706118e-09

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

20.0147421428858

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.387039984030306

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.000901244668047196

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

-4.85767660792135

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

1.49436040457081

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.00117175065287507

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

-1.97287758169284
1.66971968376726

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

-1.97287758169284
1.66971968376726

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.237529475877402

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - females only

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information