undimensional_487600

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_487600

undimensional_487600

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_38010
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/38010

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_38320
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/38320

project

http://purl.org/dc/elements/1.1/contributor

• MGP
  http://metadb.riken.jp/db/IMPC_RDF/project/8

organization

http://purl.org/dc/elements/1.1/publisher

• Wellcome Trust Sanger Institute
  http://metadb.riken.jp/db/IMPC_RDF/Organization/3

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• MGP Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/M-G-P_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Dexa-scan analysis
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/M-G-P_005_001

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• Bone Mineral Density (excluding skull)
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/M-G-P_005_001_004

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0087_1_D11

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• M-G-P_005_001_004

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• increased bone mineral density
  http://purl.obolibrary.org/obo/MP_0000062

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased bone mineral density
  http://purl.obolibrary.org/obo/MP_0000063

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 389

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 5

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 376

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 7

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 0.0488917553191489

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 0.0504773778920308

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 0.0465571428571429

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 0.05184

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• d41d8cd98f00b204e9800998ecf8427e

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 0

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.117806812944434

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -5.75%, Male: 2.94%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 0.00151608575770889

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 0.000156488021443901

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 6.77525589109343e-21

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 0.284989210502499

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• EPD0087_1_D11

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.0128221546505805

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.200145002287459

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 0.0269638088265963

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 0.0490709105790321

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 0.000168832583677185

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0492656357312531

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -0.00285658083033717

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 0.00154238605322075

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.0644457650437162

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.00175314250103876
• 0.00146276849462438

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.00175314250103876
• 0.00146276849462438

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.404362030784231

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - can not classify effect

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information