undimensional_523060

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_523060

undimensional_523060

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_44388
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/44388

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_41959
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/41959

project

http://purl.org/dc/elements/1.1/contributor

• IMPC
  http://metadb.riken.jp/db/IMPC_RDF/project/4

organization

http://purl.org/dc/elements/1.1/publisher

• Jackson Laboratory
  http://metadb.riken.jp/db/IMPC_RDF/Organization/6

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• JAX Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/JAX_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Clinical Chemistry
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_CBC_003

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• HDL-cholesterol
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_CBC_016_001

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/JR18631

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• IMPC_CBC_016_001

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

• increased circulating HDL cholesterol level
  http://purl.obolibrary.org/obo/MP_0001556

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• increased circulating HDL cholesterol level
  http://purl.obolibrary.org/obo/MP_0001556

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• increased circulating HDL cholesterol level
  http://purl.obolibrary.org/obo/MP_0001556

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 1142

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 8

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 1201

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 8

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 53.3564529558701

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 67.7475481611208

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 65.025

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 71.275

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• c079bf48ecedb903db3c27e1a20666aa

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 1

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.0480640457140878

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: 21.13%, Male: 8.31%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• 9.38098786304682

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 0.51389196597732

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 4.04313848544551e-69

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

• 0.984691822200238

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

• 0.0755463916664772

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

• 2.26142227135405e-37

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 7.05475566854345e-06

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• JR18631

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.856290937781693

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.00459301885443341

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 6.78824460996223e-05

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 30.4000424220381

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 1.77696383388732

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0437609162416132

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• 12.7697225842276

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 6.59731464955589

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.05305433281287

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 5.02053007506165
• 6.59801893990702

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 5.02053007506165
• 6.59801893990702

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.44679519023004

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - can not classify effect

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information