IMPC RDF data 統計解析結果（定量値）

undimensional_560577
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_560577

undimensional_560577(統計解析結果（定量値）)

URI表示モード

undimensional_560577

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_48818
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48818

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_37912
http://metadb.riken.jp/db/IMPC_RDF/Cohort/37912

project http://purl.org/dc/elements/1.1/contributor

EUMODIC
http://metadb.riken.jp/db/IMPC_RDF/project/1

organization http://purl.org/dc/elements/1.1/publisher

Medical Research Council centre for mouse genetics
http://metadb.riken.jp/db/IMPC_RDF/Organization/7

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

EUMODIC Pipeline 1
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/ESLIM_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Fasted Clinical Chemistry
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/ESLIM_021_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Total cholesterol
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/ESLIM_021_001_002

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0143_2_C03

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

ESLIM_021_001_002

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

decreased circulating cholesterol level
http://purl.obolibrary.org/obo/MP_0005179

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

increased circulating cholesterol level
http://purl.obolibrary.org/obo/MP_0005178

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

216

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

15

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

229

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

9

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

2.05021834061135

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

2.31967592592593

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

2.07

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

2.18866666666667

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

3de76d9197d665c7f4cc1a119f58aab1

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.0246095881099074

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: 12.35%, Male: -6.96%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

0.0392739877062182

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.0557677790819456

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

0.481817944193045

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

0.0499036337577874

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

0.00699445379309269

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

7.05388850588926e-12

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

0.00428018106613398

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

EPD0143_2_C03

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.678843522339164

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.118929434479948

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

0.000277954682561259

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

0.952292012478569

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.151770805432513

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.0021134734157422

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

0.269202828543039

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

0.128696302737785

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.0372833393791586

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

0.113131037014452
-0.151743961620955

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

0.113131037014452
-0.151743961620955

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.18081399105123

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - females only

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information