IMPC RDF data 統計解析結果（定量値）

undimensional_594602
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_594602

undimensional_594602(統計解析結果（定量値）)

URI表示モード

undimensional_594602

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_48818
http://metadb.riken.jp/db/IMPC_RDF/Cohort/48818

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_39724
http://metadb.riken.jp/db/IMPC_RDF/Cohort/39724

project http://purl.org/dc/elements/1.1/contributor

IMPC
http://metadb.riken.jp/db/IMPC_RDF/project/4

organization http://purl.org/dc/elements/1.1/publisher

Medical Research Council centre for mouse genetics
http://metadb.riken.jp/db/IMPC_RDF/Organization/7

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

Harwell
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/HRWL_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

X-ray
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_XRY_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Tibia length
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_XRY_033_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/H-ATP1A4-F02-TM1B

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

IMPC_XRY_033_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

long tibia
http://purl.obolibrary.org/obo/MP_0004357

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

1061

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

5

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

1093

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

5

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

16.9693412625801

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

17.1906691800189

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

17.5

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

17.26

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

2970f5aa28277b1582da7b15eb8898a7

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

0

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.0492853129995286

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

0.379962430295395

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

0.193415144971707

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

0.0496431909600091

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: 2.22%, Male: 2.22%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

-0.104794003597884

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.0316133882660143

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

0.000937057560589615

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

0.0603585346384618

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

0.00477849483788326

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

5.86876432914159e-35

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

7.37e-10

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

H-ATP1A4-F02-TM1B

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.454741685200787

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

7.37e-10

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

7.37e-10

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

15.540304602073

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.116678116556978

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

0

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.113096849179661

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - both sexes equally

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information