IMPC RDF data 統計解析結果（定量値）

undimensional_86870
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_86870

undimensional_86870(統計解析結果（定量値）)

URI表示モード

undimensional_86870

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_44388
http://metadb.riken.jp/db/IMPC_RDF/Cohort/44388

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_44086
http://metadb.riken.jp/db/IMPC_RDF/Cohort/44086

project http://purl.org/dc/elements/1.1/contributor

IMPC
http://metadb.riken.jp/db/IMPC_RDF/project/4

organization http://purl.org/dc/elements/1.1/publisher

Jackson Laboratory
http://metadb.riken.jp/db/IMPC_RDF/Organization/6

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

JAX Pipeline
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/JAX_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Open Field
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_OFD_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Whole arena average speed
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_OFD_009_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/JR25573

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

IMPC_OFD_009_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

hyperactivity
http://purl.obolibrary.org/obo/MP_0001399

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

hyperactivity
http://purl.obolibrary.org/obo/MP_0001399

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

hyperactivity
http://purl.obolibrary.org/obo/MP_0001399

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

1504

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

10

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

1502

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

8

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

2.09966045272969

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

1.76349069148936

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

2.86125

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

1.884

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

3d0e7f3e1b25a329501d61945fc39368

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.00119268039073924

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: 37.76%, Male: 0.55%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

-0.282035541482057

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

0.0289734817202041

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

4.93697492341607e-22

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

-0.0131137446698277

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

0.00520754353004333

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

0.01185231586178

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

7.37e-10

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

JR25573

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.405933422848872

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.2923134651775

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

7.37e-10

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

2.33789428874495

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

0.0962026675854354

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.00677662343035146

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

0.730238459425953

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

0.198983852864401

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.00024740184283415

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

0.0106975955421579
0.178275142693595

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

0.0106975955421579
0.178275142693595

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.952155219469811

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - females only

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information