IMPC RDF data 統計解析結果（定量値）

undimensional_86902
http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_86902

undimensional_86902(統計解析結果（定量値）)

URI表示モード

undimensional_86902

統計解析結果（定量値）

control cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

cohort_44388
http://metadb.riken.jp/db/IMPC_RDF/Cohort/44388

experimental cohort http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

cohort_41782
http://metadb.riken.jp/db/IMPC_RDF/Cohort/41782

project http://purl.org/dc/elements/1.1/contributor

IMPC
http://metadb.riken.jp/db/IMPC_RDF/project/4

organization http://purl.org/dc/elements/1.1/publisher

Jackson Laboratory
http://metadb.riken.jp/db/IMPC_RDF/Organization/6

pipeline http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

JAX Pipeline
http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/JAX_001

procedure http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

Open Field
http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/IMPC_OFD_001

parameter http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

Whole arena resting time
http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/IMPC_OFD_007_001

colony http://metadb.riken.jp/db/IMPC_RDF/measured_colony

http://metadb.riken.jp/db/IMPC_RDF/Colony/JR23394

dependent_variable http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

IMPC_OFD_007_001

control_selection_strategy http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

baseline_all

mp_acc http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

hypoactivity
http://purl.obolibrary.org/obo/MP_0001402

female_mp_acc http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

hyperactivity
http://purl.obolibrary.org/obo/MP_0001399

male_controls http://metadb.riken.jp/db/IMPC_RDF/male_controls

1504

male_mutants http://metadb.riken.jp/db/IMPC_RDF/male_mutants

9

female_controls http://metadb.riken.jp/db/IMPC_RDF/female_controls

1502

female_mutants http://metadb.riken.jp/db/IMPC_RDF/female_mutants

7

female_control_mean http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

931.985818908122

male_control_mean http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

958.250598404255

female_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

912.214285714286

male_experimental_mean http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

988.588888888889

metadata_group http://metadb.riken.jp/db/IMPC_RDF/metadata_group

3d0e7f3e1b25a329501d61945fc39368

stat_method http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

Mixed Model framework, linear mixed-effects model, equation withWeight
http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withWeight

workflow http://metadb.riken.jp/db/IMPC_RDF/workflow

low_batch

weight_available http://metadb.riken.jp/db/IMPC_RDF/weight_available

status http://metadb.riken.jp/db/IMPC_RDF/status

Success

batch_significance http://metadb.riken.jp/db/IMPC_RDF/batch_significance

1

variance_significance http://metadb.riken.jp/db/IMPC_RDF/variance_significance

1

null_test_significance http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

0.124654986526696

genotype_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

Female: -3.7%, Male: 3.29%

gender_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

19.9776272325393

gender_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

3.42613874677178

gender_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

6.16739377517584e-09

weight_parameter_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

1.52563524803166

weight_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

0.619479324397315

weight_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

0.0138488898029505

gp1_genotype http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

+/+

gp1_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

8.93551636743538e-10

gp2_genotype http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

JR23394

gp2_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

0.409744509048346

blups_test http://metadb.riken.jp/db/IMPC_RDF/blups_test

0.877429495144832

rotated_residuals_normality_test http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

8.22311192169384e-10

intercept_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

904.111809357465

intercept_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

11.4503214457481

interaction_significance http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

1

interaction_effect_pvalue http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

0.0442455992238191

gender_female_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

-34.9718025986292

gender_female_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

27.1137587778286

gender_female_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

0.19722459182846

gender_male_ko_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

21.6707855844622
31.1226240432906

gender_male_ko_stderr_estimate http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

21.6707855844622
31.1226240432906

gender_male_ko_pvalue http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

0.151073994461637

classification_tag http://metadb.riken.jp/db/IMPC_RDF/classification_tag

If phenotype is significant - can not classify effect

additional_information http://metadb.riken.jp/db/IMPC_RDF/additional_information