undimensional_194978

http://metadb.riken.jp/db/IMPC_RDF/Stats_undimensional_result/undimensional_194978

undimensional_194978

統計解析結果（定量値）

control cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity_Control

• cohort_48008
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/48008

experimental cohort

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesWholeEntity

• cohort_48172
  http://metadb.riken.jp/db/IMPC_RDF/Cohort/48172

project

http://purl.org/dc/elements/1.1/contributor

• MGP
  http://metadb.riken.jp/db/IMPC_RDF/project/8

organization

http://purl.org/dc/elements/1.1/publisher

• Wellcome Trust Sanger Institute
  http://metadb.riken.jp/db/IMPC_RDF/Organization/3

pipeline

http://metadb.riken.jp/db/bioresource_schema/brs_detectionPipeline

• MGP Select Pipeline
  http://metadb.riken.jp/db/IMPC_RDF/Impress_pipeline/MGP_001

procedure

http://metadb.riken.jp/db/bioresource_schema/brs_detectionProcedure

• Buffy coat peripheral blood leukocyte immunophenotyping
  http://metadb.riken.jp/db/IMPC_RDF/Impress_procedure/MGP_BCI_001

parameter

http://metadb.riken.jp/db/bioresource_schema/brs_detectionParameter

• T cell CD4+ percentage
  http://metadb.riken.jp/db/IMPC_RDF/Impress_parameter/MGP_BCI_002_001

colony

http://metadb.riken.jp/db/IMPC_RDF/measured_colony

• http://metadb.riken.jp/db/IMPC_RDF/Colony/EPD0025_6_A10

dependent_variable

http://metadb.riken.jp/db/IMPC_RDF/dependent_variable

• MGP_BCI_002_001

control_selection_strategy

http://metadb.riken.jp/db/IMPC_RDF/control_selection_strategy

• baseline_all

mp_acc

http://metadb.riken.jp/db/bioresource_schema/brs_indicatesPhenotype

male_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/male_mp_acc

• increased CD4-positive, alpha beta T cell number
  http://purl.obolibrary.org/obo/MP_0008074

female_mp_acc

http://metadb.riken.jp/db/IMPC_RDF/female_mp_acc

• decreased CD4-positive, alpha beta T cell number
  http://purl.obolibrary.org/obo/MP_0008075

male_controls

http://metadb.riken.jp/db/IMPC_RDF/male_controls

• 416

male_mutants

http://metadb.riken.jp/db/IMPC_RDF/male_mutants

• 7

female_controls

http://metadb.riken.jp/db/IMPC_RDF/female_controls

• 358

female_mutants

http://metadb.riken.jp/db/IMPC_RDF/female_mutants

• 7

female_control_mean

http://metadb.riken.jp/db/IMPC_RDF/female_control_mean

• 5.06013966480447

male_control_mean

http://metadb.riken.jp/db/IMPC_RDF/male_control_mean

• 3.90689112980769

female_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/female_experimental_mean

• 3.76428571428571

male_experimental_mean

http://metadb.riken.jp/db/IMPC_RDF/male_experimental_mean

• 4.15142857142857

metadata_group

http://metadb.riken.jp/db/IMPC_RDF/metadata_group

• a55a312a5e11d986aa7c6e14c005d49f

stat_method

http://metadb.riken.jp/db/bioresource_schema/brs_methodForStatistics

• Mixed Model framework, linear mixed-effects model, equation withoutWeight
  http://metadb.riken.jp/db/IMPC_RDF/Stasistical_procedure/Mixed_Model_framework_linear_mixed-effects_model_equation_withoutWeight

workflow

http://metadb.riken.jp/db/IMPC_RDF/workflow

• low_batch

weight_available

http://metadb.riken.jp/db/IMPC_RDF/weight_available

status

http://metadb.riken.jp/db/IMPC_RDF/status

• Success

batch_significance

http://metadb.riken.jp/db/IMPC_RDF/batch_significance

• 1

variance_significance

http://metadb.riken.jp/db/IMPC_RDF/variance_significance

• 1

null_test_significance

http://metadb.riken.jp/db/IMPC_RDF/null_test_significance

• 0.0560054989716539

genotype_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_parameter_estimate

genotype_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/genotype_stderr_estimate

genotype_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/genotype_effect_pvalue

genotype_percentage_change

http://metadb.riken.jp/db/IMPC_RDF/genotype_percentage_change

• Female: -31.3%, Male: 5.26%

gender_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_parameter_estimate

• -1.088750772519

gender_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_stderr_estimate

• 0.0980628791787185

gender_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_effect_pvalue

• 2.01512884074707e-26

weight_parameter_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_parameter_estimate

weight_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/weight_stderr_estimate

weight_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/weight_effect_pvalue

gp1_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp1_genotype

• +/+

gp1_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp1_residuals_normality_test

• 7.37e-10

gp2_genotype

http://metadb.riken.jp/db/IMPC_RDF/gp2_genotype

• EPD0025_6_A10

gp2_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/gp2_residuals_normality_test

• 0.132717251905347

blups_test

http://metadb.riken.jp/db/IMPC_RDF/blups_test

• 0.137588162250395

rotated_residuals_normality_test

http://metadb.riken.jp/db/IMPC_RDF/rotated_residuals_normality_test

• 7.37e-10

intercept_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_estimate

• 5.06576761447344

intercept_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/intercept_stderr_estimate

• 0.10505361106595

interaction_significance

http://metadb.riken.jp/db/IMPC_RDF/interaction_significance

• 1

interaction_effect_pvalue

http://metadb.riken.jp/db/IMPC_RDF/interaction_effect_pvalue

• 0.0322108817246085

gender_female_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_estimate

• -1.38729351840943

gender_female_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_stderr_estimate

• 0.627432202722065

gender_female_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_female_ko_pvalue

• 0.0273657623660874

gender_male_ko_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.233274835181946
• 0.588148755423809

gender_male_ko_stderr_estimate

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_estimate

• 0.233274835181946
• 0.588148755423809

gender_male_ko_pvalue

http://metadb.riken.jp/db/IMPC_RDF/gender_male_ko_pvalue

• 0.691768953156795

classification_tag

http://metadb.riken.jp/db/IMPC_RDF/classification_tag

• If phenotype is significant - females only

additional_information

http://metadb.riken.jp/db/IMPC_RDF/additional_information