OMAT1P000140http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100001400000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P009880 | 0.971235 | - | AT1G27680 | APL2 (ADPGLC-PPASE LARGE SUBUNIT) | - | - |
| OMAT3P005930 | 0.961912 | - | AT3G16080 | 60S ribosomal protein L37 (RPL37C) | - | - |
| OMAT1P004680 | 0.961166 | - | AT1G13230 | leucine-rich repeat family protein | - | - |
| OMAT3P101020 | 0.960669 | - | AT3G03450 | RGL2 (RGA-LIKE 2) | - | - |
| OMAT2P002900 | 0.958306 | - | AT2G18330 | AAA-type ATPase family protein | - | - |
| OMAT1P113660 | 0.956889 | - | AT1G55200 | protein kinase family protein | - | - |
| OMAT2P003580 | 0.955852 | - | AT2G20450 | 60S ribosomal protein L14 (RPL14A) | - | - |
| OMAT2P011260 | 0.955588 | - | AT2G41650 | unknown protein | - | - |
| OMAT1P024010 | 0.953093 | - | AT1G80270 | DNA-binding protein, putative | - | - |
| OMAT1P017950 | 0.949728 | - | AT1G64880 | ribosomal protein S5 family protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P007540 | -0.855744 | - | AT1G20620 | CAT3 (CATALASE 3) | - | - |
| OMAT1P110670 | -0.79835 | - | AT1G34220 | unknown protein | - | - |
| OMAT3P004330 | -0.723283 | - | AT3G12360 | ITN1 (INCREASED TOLERANCE TO NACL) | - | - |
| OMAT2P108030 | -0.698407 | - | AT2G35680 | dual specificity protein phosphatase family protein | - | - |
| OMAT3P100900 | -0.698044 | - | AT3G03150 | unknown protein | - | - |
| OMAT4P102930 | -0.679529 | - | AT4G13460 | SUVH9 | - | - |
| OMAT4P112140 | -0.661054 | - | AT4G39780 | AP2 domain-containing transcription factor, putative | - | - |
| OMAT3P104070 | -0.656544 | - | AT3G12400 | ELC | - | - |
| OMAT5P000990 | -0.64951 | - | AT5G03490 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | - | - |
| OMAT4P104230 | -0.648365 | - | AT4G17170 | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.61e-23 | :20 terms with high significance | |
| 3.61e-23 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006412 | translation | 45/201 | 6.17 | 6.43e-24 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 23/201 | 17.30 | 3.61e-23 | - | no |
| B | 4 | GO:0042254 | ribosome biogenesis | 22/201 | 17.09 | 3.85e-22 | - | no |
| B | 4 | GO:0010467 | gene expression | 63/201 | 3.08 | 3.06e-17 | 1.29E-17 | no |
| B | 4 | GO:0019538 | protein metabolic process | 57/201 | 2.46 | 2.10e-11 | - | yes |
| B | 3 | GO:0043170 | macromolecule metabolic process | 78/201 | 2.01 | 4.32e-11 | - | yes |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 54/201 | 2.49 | 4.84e-11 | - | no |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 54/201 | 2.48 | 5.44e-11 | - | no |
| B | 5 | GO:0044267 | cellular protein metabolic process | 52/201 | 2.54 | 6.06e-11 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 73/201 | 2.06 | 6.96e-11 | - | no |
| B | 5 | GO:0006396 | RNA processing | 14/201 | 6.29 | 8.46e-09 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 85/201 | 1.71 | 1.66e-08 | - | yes |
| B | 4 | GO:0044249 | cellular biosynthetic process | 57/201 | 2.02 | 3.93e-08 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 57/201 | 1.95 | 1.31e-07 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 77/201 | 1.62 | 1.06e-06 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 17/201 | 1.99 | 2.45e-03 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 55/201 | 15.69 | 6.50e-51 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 63/201 | 10.52 | 1.61e-47 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 63/201 | 10.52 | 1.61e-47 | - | no |
| C | 4 | GO:0005840 | ribosome | 46/201 | 17.87 | 2.94e-45 | - | no |
| C | 4 | GO:0033279 | ribosomal subunit | 38/201 | 23.29 | 3.54e-42 | - | no |
| C | 5 | GO:0022626 | cytosolic ribosome | 38/201 | 20.55 | 5.59e-40 | - | no |
| C | 5 | GO:0044445 | cytosolic part | 31/201 | 20.60 | 5.80e-33 | - | no |
| C | 5 | GO:0015934 | large ribosomal subunit | 25/201 | 27.03 | 3.33e-30 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 66/201 | 4.58 | 1.33e-27 | - | no |
| C | 3 | GO:0044422 | organelle part | 66/201 | 4.58 | 1.40e-27 | - | no |
| C | 5 | GO:0005829 | cytosol | 35/201 | 8.42 | 3.03e-23 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 26/201 | 9.54 | 4.48e-19 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 26/201 | 9.52 | 4.74e-19 | - | no |
| C | 3 | GO:0044424 | intracellular part | 109/201 | 2.13 | 8.96e-19 | - | no |
| C | 3 | GO:0005622 | intracellular | 111/201 | 2.08 | 2.33e-18 | - | no |
| C | 5 | GO:0005730 | nucleolus | 21/201 | 12.19 | 4.76e-18 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 100/201 | 2.15 | 4.00e-17 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 22/201 | 9.05 | 5.78e-16 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 80/201 | 2.29 | 1.39e-14 | - | no |
| C | 5 | GO:0015935 | small ribosomal subunit | 13/201 | 18.38 | 1.46e-14 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 83/201 | 2.21 | 3.14e-14 | - | no |
| C | 4 | GO:0044428 | nuclear part | 23/201 | 6.88 | 5.80e-14 | - | no |
| C | 3 | GO:0044464 | cell part | 128/201 | 1.39 | 1.03e-07 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 71/201 | 1.61 | 4.88e-06 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 71/201 | 1.61 | 4.90e-06 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 19/201 | 2.95 | 8.01e-06 | - | no |
| C | 5 | GO:0005634 | nucleus | 31/201 | 1.97 | 9.33e-05 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 26/201 | 2.09 | 1.28e-04 | - | no |
| C | 3 | GO:0016020 | membrane | 39/201 | 1.42 | 9.12e-03 | - | yes |
| M | 3 | GO:0003735 | structural constituent of ribosome | 43/201 | 19.76 | 2.54e-44 | - | no |
| M | 4 | GO:0003723 | RNA binding | 16/201 | 2.29 | 6.88e-04 | 6.00E-49 | no |
| M | 3 | GO:0000166 | nucleotide binding | 24/201 | 1.81 | 1.74e-03 | - | no |
| PS | 5 | PO:0009052 | pedicel | 144/201 | 1.76 | 1.25e-19 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 144/201 | 1.67 | 5.08e-17 | - | yes |
| PS | 3 | PO:0009032 | petal | 143/201 | 1.62 | 1.13e-15 | - | yes |
| PS | 5 | PO:0020038 | petiole | 131/201 | 1.71 | 1.84e-15 | - | yes |
| PS | 3 | PO:0009031 | sepal | 145/201 | 1.56 | 2.18e-14 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 136/201 | 1.61 | 5.30e-14 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 146/201 | 1.54 | 5.57e-14 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 146/201 | 1.54 | 5.57e-14 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 129/201 | 1.66 | 6.32e-14 | - | yes |
| PS | 3 | PO:0009005 | root | 141/201 | 1.56 | 1.47e-13 | - | yes |
| PS | 5 | PO:0008037 | seedling | 139/201 | 1.57 | 2.10e-13 | - | yes |
| PS | 4 | PO:0009025 | leaf | 142/201 | 1.54 | 3.90e-13 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 140/201 | 1.55 | 4.43e-13 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 132/201 | 1.59 | 7.34e-13 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 133/201 | 1.58 | 1.16e-12 | - | yes |
| PS | 4 | PO:0009009 | embryo | 145/201 | 1.49 | 1.81e-12 | - | yes |
| PS | 3 | PO:0009010 | seed | 146/201 | 1.48 | 2.09e-12 | - | yes |
| PS | 4 | PO:0009001 | fruit | 146/201 | 1.48 | 3.46e-12 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 146/201 | 1.48 | 3.46e-12 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 147/201 | 1.43 | 6.74e-11 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 122/201 | 1.56 | 1.13e-10 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 117/201 | 1.59 | 1.80e-10 | - | yes |
| PS | 3 | PO:0009013 | meristem | 124/201 | 1.54 | 2.26e-10 | - | yes |
| PS | 5 | PO:0009046 | flower | 147/201 | 1.41 | 2.57e-10 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 147/201 | 1.40 | 4.46e-10 | - | yes |
| PS | 4 | PO:0009047 | stem | 125/201 | 1.47 | 3.51e-09 | - | yes |
| PS | 3 | PO:0009006 | shoot | 148/201 | 1.36 | 4.89e-09 | - | yes |
| PS | 5 | PO:0006016 | leaf epidermis | 27/201 | 2.42 | 7.27e-06 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 27/201 | 2.40 | 8.28e-06 | - | no |
| PS | 4 | PO:0000293 | guard cell | 26/201 | 2.40 | 1.14e-05 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 26/201 | 2.39 | 1.24e-05 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 26/201 | 2.39 | 1.28e-05 | - | no |
| PS | 4 | PO:0005679 | epidermis | 28/201 | 2.25 | 1.92e-05 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 28/201 | 2.25 | 1.93e-05 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 26/201 | 2.29 | 2.61e-05 | - | no |
| PS | 4 | PO:0004011 | initial cell | 26/201 | 2.28 | 2.92e-05 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 26/201 | 2.28 | 3.00e-05 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 26/201 | 2.17 | 6.79e-05 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 107/201 | 1.28 | 2.91e-04 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 144/201 | 1.80 | 1.16e-20 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 145/201 | 1.74 | 3.06e-19 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 144/201 | 1.74 | 5.06e-19 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 141/201 | 1.71 | 1.60e-17 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 145/201 | 1.60 | 1.66e-15 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 145/201 | 1.60 | 2.59e-15 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 138/201 | 1.63 | 6.78e-15 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 138/201 | 1.63 | 6.92e-15 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 138/201 | 1.62 | 1.33e-14 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 130/201 | 1.68 | 1.44e-14 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 130/201 | 1.68 | 1.51e-14 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 146/201 | 1.50 | 8.85e-13 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 147/201 | 1.48 | 1.75e-12 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 147/201 | 1.44 | 3.64e-11 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 147/201 | 1.40 | 4.78e-10 | - | yes |
| KW | 0 | ribosome | - | 47/201 | 17.71 | 4.75e-46 | - | no |
| KW | 0 | ribosomal | - | 45/201 | 14.83 | 1.53e-40 | - | no |
| KW | 0 | constituent | - | 43/201 | 15.27 | 2.52e-39 | - | no |
| KW | 0 | structural | - | 44/201 | 12.49 | 2.47e-36 | - | no |
| KW | 0 | cytosolic | - | 35/201 | 16.27 | 3.14e-33 | - | no |
| KW | 0 | translation | - | 45/201 | 9.04 | 6.32e-31 | - | no |
| KW | 0 | subunit | - | 44/201 | 5.97 | 8.03e-23 | 6.00E-14 | no |
| KW | 0 | large | - | 23/201 | 14.92 | 1.25e-21 | - | no |
| KW | 0 | nucleolus | - | 16/201 | 11.71 | 5.09e-14 | - | no |
| KW | 0 | biogenesis | - | 14/201 | 10.25 | 9.90e-12 | - | no |
| KW | 0 | mitochondrial | - | 13/201 | 5.74 | 7.99e-08 | - | no |
| KW | 0 | eukaryotic | - | 12/201 | 6.07 | 1.14e-07 | - | no |
| KW | 0 | nucleotide | - | 22/201 | 3.44 | 1.31e-07 | - | no |
| KW | 0 | small | - | 15/201 | 3.70 | 3.63e-06 | - | no |
| KW | 0 | conserved | - | 30/201 | 2.20 | 1.48e-05 | - | no |
| KW | 0 | mitochondrion | - | 16/201 | 2.90 | 4.37e-05 | - | no |
| KW | 0 | intracellular | - | 14/201 | 2.70 | 2.47e-04 | - | no |
| KW | 0 | plasma | - | 21/201 | 1.82 | 2.80e-03 | - | no |
| KW | 0 | alpha | - | 15/201 | 2.05 | 3.00e-03 | - | no |
| KW | 0 | motif | - | 11/201 | 2.25 | 3.92e-03 | - | no |
| KW | 0 | development | - | 14/201 | 2.00 | 4.82e-03 | - | no |
| KW | 0 | nucleic | - | 13/201 | 1.98 | 6.60e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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