OMAT1P000970http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100009700000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P008790 | 0.921405 | - | AT1G23900 | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) | - | - |
| OMAT2P005360 | 0.921367 | - | AT2G25590 | agenet domain-containing protein | - | - |
| OMAT2P012040 | 0.91834 | - | AT2G43680 | IQD14 | - | - |
| OMAT2P000180 | 0.918173 | - | AT2G01680 | ankyrin repeat family protein | - | - |
| OMAT4P011050 | 0.916137 | - | AT4G32850 | nPAP (NUCLEAR POLY(A) POLYMERASE) | - | - |
| OMAT1P016520 | 0.910958 | - | AT1G60900 | U2 snRNP auxiliary factor large subunit, putative | - | - |
| OMAT1P010490 | 0.908456 | - | AT1G29950,AT1G29952,AT1G29951 | [AT1G29950]transcription factor/ transcription regulator, [AT1G29952]CPuORF34 (Conserved peptide upstream open reading frame 34), [AT1G29951]CPuORF35 (Conserved peptide upstream open reading frame 35) | - | - |
| OMAT3P001110 | 0.906426 | - | AT3G03350,AT3G03356,AT3G03360 | [AT3G03350]binding / catalytic/ oxidoreductase, [AT3G03356]unknown protein, [AT3G03360]F-box family protein | - | - |
| OMAT1P020110 | 0.903257 | - | AT1G70620 | cyclin-related | - | - |
| OMAT1P000020 | 0.902008 | - | AT1G01040,AT1G01046,ath-MIR838 | [AT1G01040]DCL1 (DICER-LIKE 1), [AT1G01046]MIR838a, [ath-MIR838]ath-MIR838 | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P116390 | -0.707194 | - | AT5G60970 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5) | - | - |
| OMAT3P112220 | -0.697688 | - | - | - | AT3G52150 | RNA recognition motif (RRM)-containing protein |
| OMAT4P106670 | -0.696945 | - | AT4G24770 | RBP31 (31-KDA RNA BINDING PROTEIN) | - | - |
| OMAT2P105460 | -0.681477 | - | AT2G27680 | aldo/keto reductase family protein | - | - |
| OMAT5P109710 | -0.680327 | - | - | - | AT5G40950 | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) |
| OMAT3P005850 | -0.68012 | - | AT3G15850 | FAD5 (FATTY ACID DESATURASE 5) | - | - |
| OMAT4P100070 | -0.677593 | - | AT4G00180 | YAB3 (YABBY3) | - | - |
| OMAT1P103480 | -0.677538 | - | AT1G10830 | sodium symporter-related | - | - |
| OMAT4P110110 | -0.675554 | - | AT4G34620 | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) | - | - |
| OMAT4P111030 | -0.667203 | - | AT4G36850 | INVOLVED IN: biological_process unknown | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 9.00e-16 | :20 terms with high significance | |
| 9.00e-16 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0010468 | regulation of gene expression | 24/200 | 2.25 | 6.81e-05 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 24/200 | 2.19 | 1.04e-04 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 24/200 | 2.04 | 3.17e-04 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 21/200 | 2.13 | 3.76e-04 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 22/200 | 2.09 | 3.77e-04 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 21/200 | 2.09 | 4.88e-04 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 21/200 | 2.09 | 4.88e-04 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 31/200 | 1.79 | 5.19e-04 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 22/200 | 2.03 | 5.43e-04 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 27/200 | 1.80 | 1.07e-03 | - | yes |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 20/200 | 1.99 | 1.15e-03 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 20/200 | 1.97 | 1.31e-03 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 26/200 | 1.70 | 2.75e-03 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 28/200 | 1.66 | 2.92e-03 | - | yes |
| B | 5 | GO:0006350 | transcription | 19/200 | 1.86 | 3.25e-03 | 0 | yes |
| B | 4 | GO:0010033 | response to organic substance | 13/200 | 1.94 | 7.65e-03 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 31/200 | 2.50 | 7.67e-07 | - | no |
| C | 3 | GO:0016020 | membrane | 48/200 | 1.75 | 2.87e-05 | - | no |
| C | 5 | GO:0005634 | nucleus | 30/200 | 1.92 | 1.95e-04 | 3.64E-21 | yes |
| C | 3 | GO:0044464 | cell part | 111/200 | 1.21 | 2.24e-03 | - | yes |
| M | 3 | GO:0003676 | nucleic acid binding | 43/200 | 1.81 | 3.50e-05 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 22/200 | 2.18 | 2.08e-04 | - | no |
| M | 4 | GO:0003677 | DNA binding | 26/200 | 1.88 | 6.78e-04 | - | no |
| M | 4 | GO:0003723 | RNA binding | 14/200 | 2.02 | 4.39e-03 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 22/200 | 1.67 | 6.83e-03 | - | no |
| M | 3 | GO:0005515 | protein binding | 25/200 | 1.60 | 7.41e-03 | - | no |
| PS | 3 | PO:0009013 | meristem | 153/200 | 1.90 | 2.29e-26 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 149/200 | 1.92 | 2.17e-25 | - | yes |
| PS | 4 | PO:0009047 | stem | 149/200 | 1.77 | 3.42e-21 | - | yes |
| PS | 3 | PO:0009005 | root | 151/200 | 1.68 | 3.42e-19 | - | yes |
| PS | 5 | PO:0008037 | seedling | 148/200 | 1.68 | 2.20e-18 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 137/200 | 1.77 | 2.75e-18 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 140/200 | 1.70 | 4.38e-17 | - | yes |
| PS | 4 | PO:0009025 | leaf | 149/200 | 1.62 | 5.30e-17 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 141/200 | 1.68 | 8.22e-17 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 137/200 | 1.68 | 4.33e-16 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 139/200 | 1.66 | 8.15e-16 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 138/200 | 1.66 | 9.00e-16 | - | yes |
| PS | 3 | PO:0009010 | seed | 152/200 | 1.55 | 1.07e-15 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 128/200 | 1.74 | 1.26e-15 | - | yes |
| PS | 3 | PO:0009032 | petal | 142/200 | 1.62 | 1.86e-15 | - | yes |
| PS | 4 | PO:0009001 | fruit | 152/200 | 1.55 | 1.89e-15 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 152/200 | 1.55 | 1.89e-15 | - | yes |
| PS | 4 | PO:0009009 | embryo | 150/200 | 1.55 | 3.19e-15 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 143/200 | 1.59 | 8.23e-15 | - | yes |
| PS | 5 | PO:0020038 | petiole | 129/200 | 1.69 | 9.93e-15 | - | yes |
| PS | 3 | PO:0009031 | sepal | 145/200 | 1.57 | 1.09e-14 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 154/200 | 1.50 | 1.62e-14 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 138/200 | 1.60 | 3.08e-14 | - | yes |
| PS | 3 | PO:0009006 | shoot | 158/200 | 1.46 | 7.44e-14 | - | yes |
| PS | 5 | PO:0009046 | flower | 154/200 | 1.48 | 7.71e-14 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 145/200 | 1.54 | 8.70e-14 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 145/200 | 1.54 | 8.70e-14 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 154/200 | 1.47 | 1.47e-13 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 50/200 | 1.54 | 5.13e-04 | - | yes |
| PS | 3 | PO:0020097 | generative cell | 50/200 | 1.54 | 5.13e-04 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 135/200 | 1.76 | 2.20e-17 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 135/200 | 1.75 | 2.32e-17 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 141/200 | 1.66 | 2.04e-16 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 146/200 | 1.62 | 2.42e-16 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 139/200 | 1.67 | 2.98e-16 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 140/200 | 1.66 | 3.37e-16 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 140/200 | 1.66 | 3.44e-16 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 146/200 | 1.61 | 3.81e-16 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 137/200 | 1.66 | 1.52e-15 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 134/200 | 1.68 | 1.83e-15 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 155/200 | 1.52 | 2.33e-15 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 152/200 | 1.54 | 2.87e-15 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 136/200 | 1.66 | 3.35e-15 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 148/200 | 1.53 | 4.87e-14 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 155/200 | 1.48 | 4.95e-14 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 45/200 | 1.54 | 1.05e-03 | - | yes |
| KW | 0 | plasma | - | 32/200 | 2.79 | 4.16e-08 | - | no |
| KW | 0 | membrane | - | 50/200 | 1.88 | 2.67e-06 | - | no |
| KW | 0 | dimerisation | - | 10/200 | 4.16 | 3.39e-05 | - | no |
| KW | 0 | nucleus | - | 27/200 | 2.09 | 9.28e-05 | 3.64E-21 | no |
| KW | 0 | transcription | - | 29/200 | 2.00 | 1.23e-04 | 0 | yes |
| KW | 0 | regulation | - | 27/200 | 2.04 | 1.40e-04 | - | no |
| KW | 0 | nucleic | - | 14/200 | 2.14 | 2.52e-03 | - | no |
| KW | 0 | factor | - | 28/200 | 1.60 | 4.90e-03 | 0 | yes |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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