OMAT1P003310http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100033100000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P012400 | 0.958285 | - | AT1G42480 | unknown protein | - | - |
| OMAT3P011970 | 0.953335 | - | AT3G46580 | MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5) | - | - |
| OMAT4P013870 | 0.945628 | - | AT4G39860 | unknown protein | AT4G39865 | pre-tRNA |
| OMAT1P014630 | 0.943853 | - | AT1G53070 | legume lectin family protein | - | - |
| OMAT1P006010 | 0.941878 | - | AT1G16520 | unknown protein | - | - |
| OMAT4P107350 | 0.936397 | - | AT4G26760 | MAP65-2 | - | - |
| OMAT4P000260 | 0.930237 | - | AT4G00820 | iqd17 (IQ-domain 17) | - | - |
| OMAT1P007940 | 0.930131 | - | AT1G21750 | ATPDIL1-1 (PDI-LIKE 1-1) | - | - |
| OMAT3P009390 | 0.927089 | - | AT3G25040 | ER lumen protein retaining receptor, putative / HDEL receptor, putative | - | - |
| OMAT1P007930 | 0.925997 | - | AT1G21740 | unknown protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P110670 | -0.855142 | - | AT1G34220 | unknown protein | - | - |
| OMAT1P007540 | -0.803613 | - | AT1G20620 | CAT3 (CATALASE 3) | - | - |
| OMAT5P109590 | -0.748762 | - | AT5G40470 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT2P104520 | -0.731591 | - | AT2G25070 | protein phosphatase 2C, putative / PP2C, putative | - | - |
| OMAT2P009210 | -0.713403 | - | AT2G36220 | unknown protein | - | - |
| OMAT5P106480 | -0.710841 | - | AT5G22350 | ELM1 (ELONGATED MITOCHONDRIA 1) | - | - |
| OMAT1P112190 | -0.701644 | - | AT1G50020 | unknown protein | - | - |
| OMAT2P100800 | -0.69989 | - | AT2G03730 | ACR5 | - | - |
| OMAT5P108160 | -0.69908 | - | AT5G27840 | TOPP8 | - | - |
| OMAT5P107130 | -0.695439 | - | AT5G24160 | SQE6 (SQUALENE MONOXYGENASE 6) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.07e-28 | :20 terms with high significance | |
| 1.07e-28 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0006412 | translation | 33/200 | 4.55 | 6.10e-14 | - | no |
| B | 5 | GO:0044267 | cellular protein metabolic process | 50/200 | 2.45 | 5.01e-10 | - | no |
| B | 4 | GO:0019538 | protein metabolic process | 53/200 | 2.30 | 1.48e-09 | - | no |
| B | 5 | GO:0034645 | cellular macromolecule biosynthetic process | 47/200 | 2.18 | 7.62e-08 | - | no |
| B | 4 | GO:0009059 | macromolecule biosynthetic process | 47/200 | 2.17 | 8.37e-08 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 52/200 | 1.85 | 2.65e-06 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 61/200 | 1.73 | 2.70e-06 | - | no |
| B | 3 | GO:0009790 | embryonic development | 12/200 | 4.55 | 2.94e-06 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 24/200 | 2.68 | 3.69e-06 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 77/200 | 1.55 | 5.93e-06 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 64/200 | 1.65 | 6.80e-06 | - | no |
| B | 3 | GO:0009058 | biosynthetic process | 52/200 | 1.79 | 7.31e-06 | - | no |
| B | 3 | GO:0048316 | seed development | 11/200 | 4.04 | 2.15e-05 | - | no |
| B | 4 | GO:0010467 | gene expression | 39/200 | 1.92 | 2.39e-05 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 17/200 | 2.87 | 3.10e-05 | - | no |
| B | 5 | GO:0010154 | fruit development | 11/200 | 3.85 | 3.41e-05 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 15/200 | 3.08 | 3.56e-05 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 16/200 | 2.90 | 4.33e-05 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 71/200 | 1.50 | 5.31e-05 | - | no |
| B | 3 | GO:0022414 | reproductive process | 16/200 | 2.66 | 1.28e-04 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 23/200 | 2.17 | 1.69e-04 | - | no |
| C | 5 | GO:0022626 | cytosolic ribosome | 30/200 | 16.30 | 9.17e-29 | - | no |
| C | 4 | GO:0005840 | ribosome | 33/200 | 12.88 | 5.20e-28 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 36/200 | 10.32 | 5.70e-27 | - | no |
| C | 4 | GO:0033279 | ribosomal subunit | 27/200 | 16.63 | 2.49e-26 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 42/200 | 7.05 | 1.31e-24 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 42/200 | 7.05 | 1.31e-24 | - | no |
| C | 5 | GO:0044445 | cytosolic part | 25/200 | 16.69 | 1.39e-24 | - | no |
| C | 5 | GO:0015934 | large ribosomal subunit | 18/200 | 19.56 | 1.09e-19 | - | no |
| C | 5 | GO:0005829 | cytosol | 31/200 | 7.49 | 2.85e-19 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 96/200 | 2.08 | 3.13e-15 | - | no |
| C | 3 | GO:0044424 | intracellular part | 101/200 | 1.98 | 8.63e-15 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 48/200 | 3.35 | 1.63e-14 | - | no |
| C | 3 | GO:0044422 | organelle part | 48/200 | 3.35 | 1.69e-14 | - | no |
| C | 3 | GO:0005622 | intracellular | 103/200 | 1.94 | 1.92e-14 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 82/200 | 2.19 | 7.10e-14 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 77/200 | 2.22 | 3.29e-13 | - | no |
| C | 3 | GO:0044464 | cell part | 140/200 | 1.53 | 1.10e-12 | - | yes |
| C | 4 | GO:0005886 | plasma membrane | 41/200 | 3.31 | 2.40e-12 | - | no |
| C | 3 | GO:0016020 | membrane | 61/200 | 2.23 | 2.06e-10 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 75/200 | 1.71 | 1.89e-07 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 75/200 | 1.71 | 1.91e-07 | - | no |
| C | 5 | GO:0005730 | nucleolus | 10/200 | 5.83 | 1.40e-06 | - | no |
| C | 4 | GO:0044428 | nuclear part | 14/200 | 4.21 | 1.49e-06 | - | no |
| C | 5 | GO:0005783 | endoplasmic reticulum | 11/200 | 4.85 | 3.43e-06 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 12/200 | 4.42 | 3.94e-06 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 12/200 | 4.41 | 4.04e-06 | - | no |
| C | 5 | GO:0005634 | nucleus | 33/200 | 2.11 | 1.43e-05 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 18/200 | 2.81 | 2.57e-05 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 10/200 | 4.14 | 3.55e-05 | - | no |
| C | 3 | GO:0044425 | membrane part | 16/200 | 2.02 | 2.61e-03 | - | yes |
| M | 3 | GO:0003735 | structural constituent of ribosome | 31/200 | 14.32 | 7.30e-28 | - | no |
| PS | 5 | PO:0009052 | pedicel | 165/200 | 2.03 | 5.64e-35 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 168/200 | 1.95 | 5.72e-34 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 157/200 | 2.03 | 1.58e-31 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 163/200 | 1.94 | 2.41e-31 | - | no |
| PS | 5 | PO:0020038 | petiole | 154/200 | 2.02 | 4.60e-30 | - | no |
| PS | 5 | PO:0020039 | leaf lamina | 159/200 | 1.93 | 2.58e-29 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 169/200 | 1.79 | 5.29e-29 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 169/200 | 1.79 | 5.29e-29 | - | no |
| PS | 4 | PO:0009025 | leaf | 167/200 | 1.82 | 5.66e-29 | - | no |
| PS | 3 | PO:0009032 | petal | 163/200 | 1.86 | 9.14e-29 | - | no |
| PS | 3 | PO:0009031 | sepal | 167/200 | 1.81 | 1.07e-28 | - | no |
| PS | 3 | PO:0009005 | root | 164/200 | 1.82 | 5.90e-28 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 164/200 | 1.82 | 6.07e-28 | - | no |
| PS | 5 | PO:0008037 | seedling | 162/200 | 1.84 | 1.38e-27 | - | no |
| PS | 3 | PO:0009010 | seed | 170/200 | 1.74 | 1.71e-27 | - | no |
| PS | 4 | PO:0009009 | embryo | 169/200 | 1.75 | 1.75e-27 | - | no |
| PS | 4 | PO:0009001 | fruit | 170/200 | 1.73 | 3.62e-27 | - | no |
| PS | 3 | PO:0006342 | infructescence | 170/200 | 1.73 | 3.62e-27 | - | no |
| PS | 3 | PO:0009013 | meristem | 154/200 | 1.92 | 4.49e-27 | - | no |
| PS | 3 | PO:0006001 | phyllome | 171/200 | 1.67 | 2.53e-25 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 154/200 | 1.84 | 9.40e-25 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 148/200 | 1.90 | 1.02e-24 | - | no |
| PS | 5 | PO:0009046 | flower | 169/200 | 1.62 | 5.92e-23 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 169/200 | 1.61 | 1.36e-22 | - | no |
| PS | 3 | PO:0009006 | shoot | 172/200 | 1.58 | 1.57e-22 | - | no |
| PS | 4 | PO:0009047 | stem | 148/200 | 1.75 | 1.40e-20 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 136/200 | 1.85 | 6.00e-20 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 143/200 | 1.72 | 1.83e-18 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 40/200 | 3.60 | 3.16e-13 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 40/200 | 3.57 | 3.97e-13 | - | no |
| PS | 4 | PO:0000293 | guard cell | 38/200 | 3.53 | 2.24e-12 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 38/200 | 3.52 | 2.57e-12 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 38/200 | 3.51 | 2.70e-12 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 38/200 | 3.37 | 9.31e-12 | - | no |
| PS | 4 | PO:0005679 | epidermis | 40/200 | 3.23 | 9.68e-12 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 40/200 | 3.23 | 9.83e-12 | - | no |
| PS | 4 | PO:0004011 | initial cell | 38/200 | 3.35 | 1.13e-11 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 38/200 | 3.34 | 1.18e-11 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 39/200 | 3.27 | 1.23e-11 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 48/200 | 1.65 | 1.38e-04 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 52/200 | 1.60 | 1.45e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 52/200 | 1.60 | 1.45e-04 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 167/200 | 2.10 | 4.03e-38 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 169/200 | 2.04 | 3.58e-37 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 167/200 | 2.03 | 6.95e-36 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 164/200 | 2.00 | 1.45e-33 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 158/200 | 2.05 | 1.54e-32 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 169/200 | 1.88 | 6.47e-32 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 157/200 | 2.04 | 8.81e-32 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 169/200 | 1.87 | 1.22e-31 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 159/200 | 1.88 | 9.76e-28 | - | no |
| PG | 5 | PO:0007133 | leaf production | 158/200 | 1.88 | 2.10e-27 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 158/200 | 1.88 | 2.16e-27 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 171/200 | 1.68 | 9.90e-26 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 168/200 | 1.70 | 2.14e-25 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 166/200 | 1.71 | 5.44e-25 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 171/200 | 1.63 | 5.21e-24 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 49/200 | 1.67 | 7.86e-05 | - | no |
| KW | 0 | cytosolic | - | 31/200 | 14.48 | 5.12e-28 | - | no |
| KW | 0 | ribosome | - | 33/200 | 12.50 | 1.41e-27 | - | no |
| KW | 0 | ribosomal | - | 33/200 | 10.93 | 1.17e-25 | - | no |
| KW | 0 | constituent | - | 32/200 | 11.42 | 1.57e-25 | - | no |
| KW | 0 | structural | - | 33/200 | 9.41 | 1.50e-23 | - | no |
| KW | 0 | translation | - | 33/200 | 6.66 | 7.80e-19 | - | no |
| KW | 0 | subunit | - | 38/200 | 5.18 | 9.68e-18 | - | no |
| KW | 0 | large | - | 17/200 | 11.09 | 2.47e-14 | - | no |
| KW | 0 | plasma | - | 33/200 | 2.88 | 1.21e-08 | - | no |
| KW | 0 | reticulum | - | 12/200 | 5.41 | 4.28e-07 | - | no |
| KW | 0 | endoplasmic | - | 12/200 | 5.39 | 4.42e-07 | - | no |
| KW | 0 | membrane | - | 52/200 | 1.95 | 4.80e-07 | - | yes |
| KW | 0 | conserved | - | 31/200 | 2.29 | 4.99e-06 | 3.00E-05 | no |
| KW | 0 | small | - | 14/200 | 3.47 | 1.48e-05 | - | no |
| KW | 0 | complex | - | 21/200 | 2.48 | 4.40e-05 | - | no |
| KW | 0 | nuclear | - | 11/200 | 3.58 | 6.87e-05 | - | no |
| KW | 0 | mitochondrion | - | 14/200 | 2.55 | 4.44e-04 | - | no |
| KW | 0 | nucleotide | - | 15/200 | 2.36 | 7.11e-04 | - | no |
| KW | 0 | development | - | 15/200 | 2.15 | 1.84e-03 | - | no |
| KW | 0 | nucleus | - | 23/200 | 1.78 | 2.53e-03 | - | no |
| KW | 0 | putative | - | 35/200 | 1.52 | 4.58e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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