Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
OMAT5P003070	0.877867	-	AT5G08690	ATP synthase beta chain 2, mitochondrial	-	-
OMAT2P002630	0.873341	-	AT2G17620,AT2G17630	[AT2G17620]CYCB2, [AT2G17630]phosphoserine aminotransferase, putative	-	-
OMAT5P018640	0.868096	-	AT5G61170	40S ribosomal protein S19 (RPS19C)	-	-
OMAT5P115460	0.863914	-	AT5G58480	glycosyl hydrolase family 17 protein	-	-
OMAT3P101070	0.863215	-	AT3G03550	zinc finger (C3HC4-type RING finger) family protein	-	-
OMAT2P106070	0.863204	-	AT2G29570	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)	-	-
OMAT2P011710	0.861535	-	AT2G42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	-	-
OMAT1P000030	0.85873	-	AT1G01110	IQD18 (IQ-domain 18)	-	-
OMAT5P000780	0.858303	-	AT5G02870	60S ribosomal protein L4/L1 (RPL4D)	-	-
OMAT1P000230	0.858008	-	AT1G01510	AN (ANGUSTIFOLIA)	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
OMAT4P106750	-0.805142	-	AT4G24990	ATGP4	-	-
OMAT4P110640	-0.776453	-	AT4G35860	ATGB2 (GTP-BINDING 2)	-	-
OMAT4P000860	-0.775435	-	AT4G02340	epoxide hydrolase, putative	-	-
OMAT4P104440	-0.751731	-	AT4G17840	unknown protein	-	-
OMAT4P008020	-0.750165	-	AT4G25660	unknown protein	-	-
OMAT2P002310	-0.744366	-	AT2G16710	hesB-like domain-containing protein	-	-
OMAT2P007430	-0.7287	-	AT2G31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	-	-
OMAT5P103280	-0.724071	-	AT5G11840	unknown protein	-	-
OMAT5P110420	-0.72319	-	AT5G43260	chaperone protein dnaJ-related	-	-
OMAT4P003420	-0.71892	-	AT4G13110	BSD domain-containing protein	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 7.47e-32	:20 terms with high significance
7.47e-32 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	3	GO:0009058	biosynthetic process	59/200	2.03	1.70e-08	-	no
B	5	GO:0006412	translation	24/200	3.31	7.99e-08	-	no
B	4	GO:0044249	cellular biosynthetic process	55/200	1.95	2.03e-07	-	no
B	5	GO:0010038	response to metal ion	12/200	5.00	1.03e-06	-	no
B	3	GO:0044281	small molecule metabolic process	25/200	2.78	1.22e-06	-	no
B	5	GO:0006520	cellular amino acid metabolic process	11/200	5.23	1.60e-06	-	no
B	3	GO:0044238	primary metabolic process	78/200	1.57	2.95e-06	-	yes
B	5	GO:0044271	cellular nitrogen compound biosynthetic process	12/200	4.53	3.01e-06	-	no
B	5	GO:0044106	cellular amine metabolic process	11/200	4.84	3.52e-06	-	no
B	4	GO:0010035	response to inorganic substance	12/200	4.21	6.73e-06	-	no
B	4	GO:0009059	macromolecule biosynthetic process	42/200	1.94	8.29e-06	-	no
B	4	GO:0009308	amine metabolic process	11/200	4.40	9.27e-06	-	no
B	3	GO:0044237	cellular metabolic process	73/200	1.55	1.45e-05	-	no
B	5	GO:0034645	cellular macromolecule biosynthetic process	41/200	1.90	1.78e-05	-	no
B	5	GO:0044267	cellular protein metabolic process	39/200	1.91	2.49e-05	-	no
B	4	GO:0019538	protein metabolic process	42/200	1.82	3.98e-05	-	yes
B	4	GO:0006519	cellular amino acid and derivative metabolic process	12/200	3.45	5.31e-05	-	no
B	5	GO:0043436	oxoacid metabolic process	13/200	2.95	1.52e-04	-	no
B	4	GO:0006082	organic acid metabolic process	13/200	2.94	1.57e-04	-	no
B	4	GO:0042180	cellular ketone metabolic process	13/200	2.90	1.85e-04	-	no
B	4	GO:0044283	small molecule biosynthetic process	13/200	2.86	2.09e-04	-	no
B	3	GO:0043170	macromolecule metabolic process	58/200	1.50	3.55e-04	-	yes
B	3	GO:0006996	organelle organization	10/200	3.00	5.80e-04	-	no
B	4	GO:0044260	cellular macromolecule metabolic process	53/200	1.50	6.18e-04	-	no
B	4	GO:0034641	cellular nitrogen compound metabolic process	32/200	1.64	1.82e-03	-	no
B	3	GO:0006807	nitrogen compound metabolic process	32/200	1.61	2.50e-03	-	no
B	3	GO:0009628	response to abiotic stimulus	14/200	1.89	7.85e-03	-	no

C	3	GO:0043229	intracellular organelle	121/200	2.62	1.50e-30	-	yes
C	3	GO:0044424	intracellular part	125/200	2.45	4.33e-29	-	yes
C	3	GO:0005622	intracellular	127/200	2.39	1.48e-28	-	yes
C	4	GO:0005737	cytoplasm	105/200	2.80	1.27e-27	-	yes
C	4	GO:0044444	cytoplasmic part	100/200	2.88	7.13e-27	-	yes
C	4	GO:0043231	intracellular membrane-bounded organelle	112/200	2.55	2.48e-26	-	yes
C	3	GO:0043227	membrane-bounded organelle	112/200	2.55	2.51e-26	-	yes
C	3	GO:0044464	cell part	156/200	1.70	2.02e-21	-	yes
C	3	GO:0043228	non-membrane-bounded organelle	35/200	5.87	3.88e-18	-	no
C	4	GO:0043232	intracellular non-membrane-bounded organelle	35/200	5.87	3.88e-18	-	no
C	4	GO:0005886	plasma membrane	49/200	3.96	1.06e-17	-	no
C	3	GO:0044446	intracellular organelle part	52/200	3.63	3.75e-17	-	no
C	3	GO:0044422	organelle part	52/200	3.62	3.89e-17	-	no
C	3	GO:0016020	membrane	72/200	2.63	4.31e-16	-	no
C	5	GO:0005739	mitochondrion	31/200	4.84	6.43e-14	-	no
C	4	GO:0033279	ribosomal subunit	17/200	10.47	6.62e-14	-	no
C	5	GO:0044445	cytosolic part	16/200	10.68	2.29e-13	-	no
C	4	GO:0044428	nuclear part	22/200	6.61	4.34e-13	-	no
C	5	GO:0005730	nucleolus	16/200	9.33	2.02e-12	-	no
C	4	GO:0005618	cell wall	21/200	6.33	3.34e-12	-	no
C	3	GO:0030312	external encapsulating structure	21/200	6.28	3.85e-12	-	no
C	4	GO:0070013	intracellular organelle lumen	19/200	7.00	5.01e-12	-	no
C	3	GO:0043233	organelle lumen	19/200	6.99	5.21e-12	-	no
C	5	GO:0022626	cytosolic ribosome	16/200	8.69	6.28e-12	-	no
C	4	GO:0044429	mitochondrial part	14/200	10.03	1.34e-11	-	no
C	4	GO:0005840	ribosome	18/200	7.03	1.59e-11	-	no
C	5	GO:0005829	cytosol	22/200	5.32	3.60e-11	-	no
C	4	GO:0019866	organelle inner membrane	13/200	10.24	4.65e-11	-	no
C	5	GO:0031981	nuclear lumen	17/200	7.03	5.21e-11	-	no
C	4	GO:0031966	mitochondrial membrane	12/200	10.73	1.22e-10	-	no
C	5	GO:0005740	mitochondrial envelope	12/200	10.03	2.83e-10	-	no
C	5	GO:0005743	mitochondrial inner membrane	11/200	10.89	5.00e-10	-	no
C	5	GO:0005634	nucleus	42/200	2.69	9.70e-10	-	no
C	5	GO:0009536	plastid	46/200	2.49	1.67e-09	-	no
C	3	GO:0030529	ribonucleoprotein complex	18/200	5.16	2.79e-09	-	no
C	3	GO:0031090	organelle membrane	15/200	5.14	4.76e-08	-	no
C	5	GO:0009505	plant-type cell wall	11/200	6.98	7.33e-08	-	no
C	5	GO:0005783	endoplasmic reticulum	13/200	5.73	8.01e-08	-	no
C	5	GO:0005773	vacuole	16/200	4.63	8.43e-08	7.27E-21	yes
C	4	GO:0031967	organelle envelope	17/200	4.08	2.42e-07	-	no
C	3	GO:0031975	envelope	17/200	4.08	2.42e-07	-	no
C	3	GO:0043234	protein complex	20/200	3.06	2.89e-06	-	no
C	3	GO:0044425	membrane part	20/200	2.53	4.86e-05	-	no
C	5	GO:0044434	chloroplast part	13/200	2.35	1.45e-03	-	no
C	4	GO:0044435	plastid part	13/200	2.28	1.86e-03	-	no

M	3	GO:0003735	structural constituent of ribosome	18/200	8.31	8.47e-13	-	no
M	4	GO:0043169	cation binding	34/200	2.37	8.39e-07	-	no
M	3	GO:0043167	ion binding	34/200	2.37	8.39e-07	-	no
M	5	GO:0046872	metal ion binding	32/200	2.36	1.90e-06	-	no
M	3	GO:0000166	nucleotide binding	30/200	2.27	8.23e-06	-	no
M	5	GO:0032555	purine ribonucleotide binding	24/200	2.45	1.78e-05	-	no
M	4	GO:0032553	ribonucleotide binding	24/200	2.45	1.78e-05	-	no
M	4	GO:0017076	purine nucleotide binding	24/200	2.31	4.47e-05	-	no
M	5	GO:0030554	adenyl nucleotide binding	20/200	2.21	3.09e-04	-	no
M	4	GO:0001883	purine nucleoside binding	20/200	2.21	3.09e-04	-	no
M	3	GO:0001882	nucleoside binding	20/200	2.21	3.20e-04	-	no
M	3	GO:0005515	protein binding	28/200	1.79	9.44e-04	-	no
M	5	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	10/200	2.25	5.42e-03	-	no
M	4	GO:0016817	hydrolase activity, acting on acid anhydrides	10/200	2.23	5.81e-03	-	no

PS	5	PO:0020038	petiole	172/200	2.26	7.60e-46	-	yes
PS	5	PO:0020039	leaf lamina	177/200	2.15	1.77e-45	-	yes
PS	4	PO:0009025	leaf	180/200	1.96	8.47e-41	-	yes
PS	5	PO:0009052	pedicel	168/200	2.07	1.31e-37	-	yes
PS	4	PO:0000037	shoot apex	172/200	2.00	1.52e-37	-	yes
PS	3	PO:0006001	phyllome	183/200	1.78	5.36e-36	-	yes
PS	3	PO:0009013	meristem	163/200	2.03	5.05e-34	-	yes
PS	5	PO:0000013	cauline leaf	160/200	2.07	6.29e-34	-	yes
PS	5	PO:0008037	seedling	168/200	1.90	2.40e-32	-	yes
PS	3	PO:0009005	root	169/200	1.88	5.81e-32	-	yes
PS	3	PO:0009032	petal	167/200	1.91	5.84e-32	-	yes
PS	3	PO:0009006	shoot	183/200	1.69	7.47e-32	-	yes
PS	5	PO:0009027	megasporophyll	163/200	1.94	2.41e-31	-	yes
PS	3	PO:0009031	sepal	170/200	1.84	3.91e-31	-	yes
PS	4	PO:0009009	embryo	172/200	1.78	6.51e-30	-	yes
PS	5	PO:0008034	leaf whorl	170/200	1.80	8.15e-30	-	yes
PS	4	PO:0008033	phyllome whorl	170/200	1.80	8.15e-30	-	yes
PS	3	PO:0009010	seed	172/200	1.76	4.14e-29	-	yes
PS	4	PO:0009001	fruit	172/200	1.75	8.96e-29	-	yes
PS	3	PO:0006342	infructescence	172/200	1.75	8.96e-29	-	yes
PS	4	PO:0009026	sporophyll	165/200	1.83	1.03e-28	-	yes
PS	4	PO:0020030	cotyledon	144/200	1.96	6.56e-25	-	yes
PS	4	PO:0000230	inflorescence meristem	148/200	1.90	1.02e-24	-	yes
PS	5	PO:0009028	microsporophyll	153/200	1.82	4.46e-24	-	yes
PS	5	PO:0009046	flower	170/200	1.63	1.11e-23	-	yes
PS	4	PO:0009049	inflorescence	170/200	1.62	2.57e-23	-	yes
PS	4	PO:0000293	guard cell	52/200	4.83	1.18e-22	-	yes
PS	4	PO:0000351	guard mother cell	52/200	4.81	1.45e-22	-	yes
PS	3	PO:0000070	meristemoid	52/200	4.80	1.56e-22	-	yes
PS	5	PO:0006016	leaf epidermis	52/200	4.68	5.30e-22	-	yes
PS	5	PO:0006035	shoot epidermis	52/200	4.64	7.28e-22	-	yes
PS	5	PO:0000349	epidermal initial	52/200	4.61	9.96e-22	-	yes
PS	4	PO:0004011	initial cell	52/200	4.58	1.33e-21	-	yes
PS	3	PO:0004010	meristematic cell	52/200	4.57	1.43e-21	-	yes
PS	3	PO:0004013	epidermal cell	53/200	4.44	2.06e-21	-	yes
PS	4	PO:0005679	epidermis	53/200	4.28	1.14e-20	-	yes
PS	3	PO:0009014	dermal tissue	53/200	4.28	1.17e-20	-	yes
PS	3	PO:0020091	male gametophyte	146/200	1.76	3.30e-20	-	no
PS	4	PO:0009047	stem	146/200	1.73	2.18e-19	-	yes
PS	3	PO:0000084	sperm cell	59/200	1.82	8.10e-07	-	no
PS	3	PO:0020097	generative cell	59/200	1.82	8.10e-07	-	no

PG	5	PO:0001081	F mature embryo stage	168/200	2.11	4.95e-39	-	yes
PG	5	PO:0001078	E expanded cotyledon stage	170/200	2.05	4.39e-38	-	yes
PG	5	PO:0004507	D bilateral stage	168/200	2.04	9.06e-37	-	yes
PG	3	PO:0001170	seed development stages	174/200	1.92	4.77e-36	-	yes
PG	4	PO:0001054	4 leaf senescence stage	162/200	2.11	7.30e-36	-	yes
PG	3	PO:0001050	leaf development stages	162/200	2.11	7.89e-36	-	yes
PG	5	PO:0001185	C globular stage	164/200	2.00	1.45e-33	-	yes
PG	4	PO:0007631	embryo development stages	170/200	1.89	9.15e-33	-	yes
PG	3	PO:0007134	A vegetative growth	163/200	1.92	8.40e-31	-	yes
PG	4	PO:0007600	3 floral organ development stages	177/200	1.74	1.04e-30	-	yes
PG	5	PO:0007133	leaf production	162/200	1.93	1.96e-30	-	yes
PG	4	PO:0007112	1 main shoot growth	162/200	1.93	2.01e-30	-	yes
PG	3	PO:0007615	flower development stages	177/200	1.69	7.73e-29	-	yes
PG	4	PO:0007616	4 anthesis	169/200	1.74	2.93e-27	-	yes
PG	5	PO:0007604	corolla developmental stages	170/200	1.72	6.31e-27	-	yes

KW	0	subunit	-	36/200	4.91	4.00e-16	-	no
KW	0	ribosomal	-	21/200	6.96	5.14e-13	-	no
KW	0	plasma	-	40/200	3.49	8.41e-13	-	no
KW	0	translation	-	26/200	5.25	9.83e-13	-	no
KW	0	constituent	-	19/200	6.78	9.04e-12	-	no
KW	0	structural	-	21/200	5.99	9.68e-12	-	no
KW	0	ribosome	-	18/200	6.82	2.66e-11	-	no
KW	0	mitochondrion	-	24/200	4.38	3.13e-10	-	no
KW	0	membrane	-	59/200	2.22	5.44e-10	-	no
KW	0	mitochondrial	-	14/200	6.21	1.02e-08	-	no
KW	0	cytosolic	-	13/200	6.07	3.95e-08	-	no
KW	0	components	-	11/200	6.77	1.02e-07	-	no
KW	0	chloroplast	-	41/200	2.32	1.02e-07	-	no
KW	0	nucleotide	-	22/200	3.46	1.19e-07	-	no
KW	0	terminal	-	42/200	2.18	4.06e-07	-	no
KW	0	reticulum	-	12/200	5.41	4.28e-07	-	no
KW	0	endoplasmic	-	12/200	5.39	4.42e-07	-	no
KW	0	chain	-	13/200	4.30	2.50e-06	1.00E-27	no
KW	0	conserved	-	29/200	2.14	3.47e-05	-	no
KW	0	complex	-	21/200	2.48	4.40e-05	-	no
KW	0	phosphate	-	11/200	3.63	6.03e-05	-	no
KW	0	biosynthetic	-	18/200	2.52	1.11e-04	-	no
KW	0	atpase	-	11/200	3.12	2.45e-04	-	no
KW	0	vacuole	-	10/200	3.17	3.60e-04	7.27E-21	yes
KW	0	nucleic	-	15/200	2.29	9.44e-04	-	no
KW	0	class	-	14/200	2.34	1.08e-03	-	no
KW	0	alpha	-	16/200	2.19	1.12e-03	-	no
KW	0	nucleus	-	24/200	1.86	1.18e-03	-	no
KW	0	catalytic	-	20/200	1.97	1.36e-03	-	no
KW	0	process	-	33/200	1.61	2.21e-03	-	no
KW	0	encodes	-	39/200	1.53	2.51e-03	-	no
KW	0	putative	-	36/200	1.56	2.55e-03	-	no
KW	0	small	-	10/200	2.48	2.59e-03	-	no
KW	0	stress	-	11/200	2.34	2.84e-03	-	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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label http://www.w3.org/2000/01/rdf-schema#label