OMAT1P007580http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100075800000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P020570 | 0.904046 | - | AT1G71800 | cleavage stimulation factor, putative | - | - |
| OMAT4P107470 | 0.903639 | - | AT4G27120,AT4G27130 | [AT4G27120]unknown protein, [AT4G27130]eukaryotic translation initiation factor SUI1, putative | - | - |
| OMAT4P006665 | 0.89628 | - | AT4G21800 | QQT2 (quatre-quart2) | - | - |
| OMAT4P004830 | 0.896124 | - | AT4G16510 | YbaK/prolyl-tRNA synthetase-related | - | - |
| OMAT1P012660 | 0.891655 | - | AT1G44810 | transcription regulator | - | - |
| OMAT1P015990 | 0.891433 | - | AT1G58150 | unknown protein | AT1G58140 | transposable element gene |
| OMAT1P022730 | 0.891311 | - | AT1G77220,AT1G77230,AT1G77235,ath-MIR402 | [AT1G77220]unknown protein, [AT1G77230]tetratricopeptide repeat (TPR)-containing protein, [AT1G77235]MIR402, [ath-MIR402]ath-MIR402 | AT1G77240 | AMP-binding protein, putative |
| OMAT4P011080 | 0.885249 | - | AT4G32910 | INVOLVED IN: biological_process unknown | - | - |
| OMAT4P002140 | 0.88126 | - | AT4G08900 | arginase | - | - |
| OMAT1P002280 | 0.879544 | - | AT1G07130 | STN1 | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P017050 | -0.840662 | - | AT1G62520 | unknown protein | - | - |
| OMAT2P111130 | -0.824129 | - | AT2G43560 | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein | - | - |
| OMAT3P105220 | -0.822529 | - | AT3G15520 | peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase | AT3G15518 | unknown protein |
| OMAT1P112880 | -0.816966 | - | AT1G52510 | hydrolase, alpha/beta fold family protein | AT1G52500 | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) |
| OMAT1P011010 | -0.813188 | - | - | - | AT1G31330 | PSAF (photosystem I subunit F) |
| OMAT3P110830 | -0.808064 | - | AT3G47470 | LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) | - | - |
| OMAT3P113280 | -0.805316 | - | AT3G54890 | LHCA1 | - | - |
| OMAT1P010480 | -0.801926 | - | AT1G29930 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) | - | - |
| OMAT3P109100 | -0.801252 | - | - | - | AT3G27690 | LHCB2.3 |
| OMAT2P104260 | -0.801154 | - | AT2G23840 | HNH endonuclease domain-containing protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 4.04e-23 | :20 terms with high significance | |
| 4.04e-23 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0044237 | cellular metabolic process | 73/200 | 1.55 | 1.45e-05 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 57/200 | 1.62 | 4.91e-05 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 37/200 | 1.86 | 6.90e-05 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 30/200 | 2.00 | 9.62e-05 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 36/200 | 1.85 | 1.01e-04 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 71/200 | 1.43 | 2.58e-04 | - | no |
| B | 4 | GO:0044248 | cellular catabolic process | 11/200 | 3.05 | 3.03e-04 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 31/200 | 1.84 | 3.37e-04 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 58/200 | 1.50 | 3.55e-04 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 22/200 | 2.07 | 4.24e-04 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 12/200 | 2.73 | 5.27e-04 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 12/200 | 2.72 | 5.41e-04 | - | no |
| B | 3 | GO:0006996 | organelle organization | 10/200 | 3.00 | 5.80e-04 | - | yes |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 12/200 | 2.67 | 6.29e-04 | - | no |
| B | 3 | GO:0009056 | catabolic process | 11/200 | 2.31 | 3.25e-03 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 16/200 | 1.88 | 5.39e-03 | - | no |
| C | 3 | GO:0005622 | intracellular | 90/200 | 1.69 | 6.81e-09 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 81/200 | 1.75 | 1.22e-08 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 86/200 | 1.69 | 2.16e-08 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 75/200 | 1.71 | 1.89e-07 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 75/200 | 1.71 | 1.91e-07 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 20/200 | 3.13 | 2.04e-06 | - | no |
| C | 5 | GO:0005634 | nucleus | 34/200 | 2.17 | 5.61e-06 | 5.36E-16 | no |
| C | 3 | GO:0043234 | protein complex | 19/200 | 2.90 | 1.03e-05 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 59/200 | 1.58 | 7.56e-05 | - | no |
| C | 4 | GO:0044428 | nuclear part | 11/200 | 3.31 | 1.44e-04 | 4.75E-13 | no |
| C | 4 | GO:0044444 | cytoplasmic part | 52/200 | 1.50 | 7.76e-04 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 25/200 | 1.74 | 2.37e-03 | - | yes |
| C | 3 | GO:0044422 | organelle part | 25/200 | 1.74 | 2.40e-03 | - | yes |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | yes |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 12/200 | 2.01 | 7.25e-03 | - | yes |
| PS | 4 | PO:0009047 | stem | 161/200 | 1.91 | 1.73e-29 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 162/200 | 1.88 | 4.32e-29 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 154/200 | 1.89 | 2.01e-26 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 150/200 | 1.93 | 4.50e-26 | - | yes |
| PS | 3 | PO:0009010 | seed | 168/200 | 1.72 | 6.02e-26 | 3.72E-17 | yes |
| PS | 3 | PO:0009005 | root | 161/200 | 1.79 | 9.86e-26 | - | yes |
| PS | 3 | PO:0009013 | meristem | 152/200 | 1.89 | 1.13e-25 | - | yes |
| PS | 4 | PO:0009001 | fruit | 168/200 | 1.71 | 1.25e-25 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 168/200 | 1.71 | 1.25e-25 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 146/200 | 1.89 | 1.08e-23 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 151/200 | 1.83 | 1.19e-23 | - | yes |
| PS | 4 | PO:0009025 | leaf | 159/200 | 1.73 | 4.04e-23 | - | yes |
| PS | 4 | PO:0009009 | embryo | 163/200 | 1.69 | 4.56e-23 | - | yes |
| PS | 3 | PO:0009032 | petal | 155/200 | 1.77 | 4.67e-23 | - | yes |
| PS | 3 | PO:0009031 | sepal | 159/200 | 1.72 | 7.16e-23 | - | yes |
| PS | 5 | PO:0008037 | seedling | 155/200 | 1.76 | 1.12e-22 | 1.16E-17 | yes |
| PS | 4 | PO:0020030 | cotyledon | 140/200 | 1.91 | 2.40e-22 | - | yes |
| PS | 5 | PO:0020038 | petiole | 142/200 | 1.87 | 7.06e-22 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 159/200 | 1.69 | 9.76e-22 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 159/200 | 1.69 | 9.76e-22 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 149/200 | 1.78 | 1.71e-21 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 148/200 | 1.76 | 8.15e-21 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 166/200 | 1.59 | 1.59e-20 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 153/200 | 1.70 | 2.17e-20 | - | yes |
| PS | 5 | PO:0009046 | flower | 165/200 | 1.59 | 3.32e-20 | - | yes |
| PS | 3 | PO:0009006 | shoot | 168/200 | 1.55 | 9.72e-20 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 163/200 | 1.59 | 1.03e-19 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 144/200 | 1.74 | 4.91e-19 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 67/200 | 2.06 | 5.45e-10 | - | no |
| PS | 3 | PO:0020097 | generative cell | 67/200 | 2.06 | 5.45e-10 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 51/200 | 1.75 | 1.60e-05 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 164/200 | 1.98 | 7.43e-33 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 158/200 | 1.99 | 1.31e-30 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 160/200 | 1.94 | 4.04e-30 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 167/200 | 1.85 | 5.36e-30 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 166/200 | 1.84 | 1.82e-29 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 153/200 | 1.86 | 3.10e-25 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 145/200 | 1.89 | 2.90e-23 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 145/200 | 1.88 | 3.09e-23 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 151/200 | 1.79 | 1.34e-22 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 151/200 | 1.79 | 1.38e-22 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 164/200 | 1.66 | 1.59e-22 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 151/200 | 1.78 | 3.09e-22 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 166/200 | 1.63 | 4.44e-22 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 166/200 | 1.58 | 1.76e-20 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 156/200 | 1.61 | 2.17e-18 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 55/200 | 1.88 | 7.53e-07 | - | no |
| KW | 0 | mitochondrion | - | 18/200 | 3.28 | 2.97e-06 | - | no |
| KW | 0 | subunit | - | 21/200 | 2.86 | 4.84e-06 | 4.21E-16 | no |
| KW | 0 | ubiquitin | - | 15/200 | 3.34 | 1.32e-05 | - | no |
| KW | 0 | complex | - | 22/200 | 2.60 | 1.46e-05 | - | no |
| KW | 0 | ligase | - | 13/200 | 3.33 | 4.29e-05 | - | no |
| KW | 0 | cellular_component | - | 73/200 | 1.50 | 4.45e-05 | - | no |
| KW | 0 | nucleus | - | 26/200 | 2.02 | 2.25e-04 | 5.36E-16 | no |
| KW | 0 | nucleotide | - | 16/200 | 2.51 | 2.43e-04 | - | no |
| KW | 0 | encodes | - | 41/200 | 1.61 | 7.38e-04 | 1.59E-16 | yes |
| KW | 0 | terminal | - | 33/200 | 1.71 | 7.91e-04 | 4.75E-13 | no |
| KW | 0 | region | - | 26/200 | 1.80 | 1.27e-03 | 7.00E-06 | no |
| KW | 0 | repeat | - | 24/200 | 1.85 | 1.29e-03 | - | no |
| KW | 0 | dependent | - | 23/200 | 1.72 | 4.06e-03 | 4.75E-13 | no |
| KW | 0 | development | - | 14/200 | 2.01 | 4.60e-03 | 2.18E-15 | no |
| KW | 0 | finger | - | 17/200 | 1.84 | 5.55e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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