OMAT1P016010http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100160100000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P110000 | 0.900046 | - | AT1G31770 | ABC transporter family protein | - | - |
| OMAT4P105710 | 0.891619 | - | AT4G22120 | early-responsive to dehydration protein-related / ERD protein-related | - | - |
| OMAT5P107730 | 0.8819 | - | AT5G25830 | zinc finger (GATA type) family protein | - | - |
| OMAT5P115180 | 0.878163 | - | AT5G57740 | XBAT32 | - | - |
| OMAT3P105420 | 0.870068 | - | AT3G16070 | unknown protein | - | - |
| OMAT3P104720 | 0.869313 | - | AT3G14172 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT3P115990 | 0.862005 | - | AT3G63460 | WD-40 repeat family protein | - | - |
| OMAT5P115230 | 0.860856 | - | AT5G57840 | transferase family protein | - | - |
| OMAT5P014200 | 0.855238 | - | AT5G49680 | cell expansion protein, putative | - | - |
| OMAT1P110900 | 0.851647 | - | AT1G35780 | unknown protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P005410 | -0.758454 | - | AT1G15180 | MATE efflux family protein | - | - |
| OMAT1P115300 | -0.751648 | - | AT1G62510 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | - | - |
| OMAT5P106710 | -0.733974 | - | AT5G23040 | CDF1 (CELL GROWTH DEFECT FACTOR 1) | - | - |
| OMAT4P100060 | -0.729755 | - | AT4G00180 | YAB3 (YABBY3) | - | - |
| OMAT5P020200 | -0.729671 | - | AT5G65410 | HB25 (HOMEOBOX PROTEIN 25) | - | - |
| OMAT1P004350 | -0.698916 | - | AT1G12410 | CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) | - | - |
| OMAT1P012350 | -0.690374 | - | AT1G36320 | unknown protein | - | - |
| OMAT4P001030 | -0.683572 | - | AT4G02725 | unknown protein | - | - |
| OMAT1P017040 | -0.674763 | - | - | - | AT1G62510 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein |
| OMAT5P110710 | -0.670681 | - | AT5G44000 | glutathione S-transferase C-terminal domain-containing protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.87e-30 | :20 terms with high significance | |
| 1.87e-30 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0023033 | signaling pathway | 13/200 | 3.85 | 8.83e-06 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 21/200 | 2.34 | 1.04e-04 | - | yes |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 11/200 | 3.27 | 1.59e-04 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 14/200 | 2.69 | 2.58e-04 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 16/200 | 2.41 | 3.96e-04 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 16/200 | 2.41 | 4.00e-04 | - | no |
| B | 4 | GO:0048513 | organ development | 12/200 | 2.71 | 5.55e-04 | - | no |
| B | 4 | GO:0048731 | system development | 12/200 | 2.71 | 5.62e-04 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 15/200 | 2.24 | 1.19e-03 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 20/200 | 1.76 | 4.95e-03 | - | yes |
| B | 3 | GO:0042221 | response to chemical stimulus | 20/200 | 1.75 | 5.25e-03 | - | no |
| B | 5 | GO:0006464 | protein modification process | 18/200 | 1.73 | 8.56e-03 | - | yes |
| C | 4 | GO:0005886 | plasma membrane | 42/200 | 3.39 | 5.68e-13 | - | no |
| C | 3 | GO:0016020 | membrane | 65/200 | 2.37 | 2.42e-12 | - | no |
| C | 3 | GO:0044464 | cell part | 132/200 | 1.44 | 2.43e-09 | - | yes |
| C | 3 | GO:0044425 | membrane part | 16/200 | 2.02 | 2.61e-03 | - | no |
| C | 3 | GO:0043234 | protein complex | 13/200 | 1.99 | 6.37e-03 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 11/200 | 2.05 | 8.07e-03 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 17/200 | 2.74 | 5.71e-05 | - | no |
| M | 5 | GO:0016301 | kinase activity | 20/200 | 2.49 | 6.22e-05 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 21/200 | 2.29 | 1.40e-04 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 30/200 | 1.92 | 1.91e-04 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 12/200 | 2.70 | 5.83e-04 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 12/200 | 2.67 | 6.36e-04 | - | no |
| M | 3 | GO:0016740 | transferase activity | 29/200 | 1.77 | 8.99e-04 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 17/200 | 1.88 | 4.43e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 17/200 | 1.88 | 4.43e-03 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 12/200 | 2.14 | 4.49e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 17/200 | 1.87 | 4.55e-03 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 10/200 | 2.27 | 5.06e-03 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 22/200 | 1.67 | 6.83e-03 | - | no |
| M | 3 | GO:0005515 | protein binding | 25/200 | 1.60 | 7.41e-03 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 18/200 | 1.73 | 8.32e-03 | - | no |
| PS | 3 | PO:0009005 | root | 180/200 | 2.00 | 2.32e-42 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 174/200 | 1.85 | 3.05e-33 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 174/200 | 1.85 | 3.05e-33 | - | yes |
| PS | 3 | PO:0009032 | petal | 168/200 | 1.92 | 8.49e-33 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 159/200 | 2.05 | 8.93e-33 | - | yes |
| PS | 5 | PO:0008037 | seedling | 168/200 | 1.90 | 2.40e-32 | - | yes |
| PS | 4 | PO:0009009 | embryo | 174/200 | 1.80 | 1.27e-31 | - | yes |
| PS | 3 | PO:0009013 | meristem | 160/200 | 1.99 | 1.38e-31 | - | yes |
| PS | 3 | PO:0009031 | sepal | 170/200 | 1.84 | 3.91e-31 | - | yes |
| PS | 5 | PO:0009046 | flower | 179/200 | 1.72 | 4.43e-31 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 160/200 | 1.97 | 6.96e-31 | - | yes |
| PS | 3 | PO:0009010 | seed | 174/200 | 1.78 | 8.46e-31 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 179/200 | 1.71 | 1.15e-30 | - | yes |
| PS | 4 | PO:0009001 | fruit | 174/200 | 1.77 | 1.87e-30 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 174/200 | 1.77 | 1.87e-30 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 176/200 | 1.72 | 2.16e-29 | - | yes |
| PS | 3 | PO:0009006 | shoot | 180/200 | 1.66 | 4.94e-29 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 160/200 | 1.86 | 1.39e-27 | - | yes |
| PS | 4 | PO:0009025 | leaf | 165/200 | 1.79 | 2.02e-27 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 157/200 | 1.87 | 8.68e-27 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 161/200 | 1.79 | 1.01e-25 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 153/200 | 1.86 | 5.41e-25 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 138/200 | 1.79 | 7.59e-19 | - | yes |
| PS | 5 | PO:0020038 | petiole | 135/200 | 1.77 | 8.06e-18 | - | no |
| PS | 4 | PO:0009047 | stem | 143/200 | 1.69 | 1.10e-17 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 142/200 | 1.69 | 2.09e-17 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 140/200 | 1.69 | 8.10e-17 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 117/200 | 1.59 | 1.16e-10 | - | no |
| PS | 3 | PO:0000034 | vascular system | 14/200 | 4.29 | 1.19e-06 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 51/200 | 1.57 | 2.76e-04 | - | yes |
| PS | 3 | PO:0020097 | generative cell | 51/200 | 1.57 | 2.76e-04 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 45/200 | 1.54 | 9.45e-04 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 176/200 | 1.78 | 5.94e-32 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 169/200 | 1.88 | 6.47e-32 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 169/200 | 1.87 | 1.22e-31 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 178/200 | 1.75 | 1.31e-31 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 180/200 | 1.72 | 1.55e-31 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 173/200 | 1.78 | 1.60e-30 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 159/200 | 1.93 | 2.36e-29 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 159/200 | 1.92 | 6.52e-29 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 158/200 | 1.93 | 8.03e-29 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 154/200 | 1.94 | 1.27e-27 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 141/200 | 1.83 | 8.70e-21 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 141/200 | 1.83 | 9.22e-21 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 148/200 | 1.76 | 1.01e-20 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 148/200 | 1.76 | 1.04e-20 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 148/200 | 1.75 | 2.25e-20 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 43/200 | 1.47 | 3.30e-03 | - | no |
| KW | 0 | membrane | - | 65/200 | 2.44 | 6.52e-13 | - | no |
| KW | 0 | plasma | - | 40/200 | 3.49 | 8.41e-13 | - | no |
| KW | 0 | transmembrane | - | 23/200 | 3.17 | 3.15e-07 | - | no |
| KW | 0 | movement | - | 10/200 | 6.55 | 4.53e-07 | - | no |
| KW | 0 | pathway | - | 13/200 | 4.84 | 6.26e-07 | - | no |
| KW | 0 | atpase | - | 13/200 | 3.69 | 1.41e-05 | - | no |
| KW | 0 | phosphorylation | - | 18/200 | 2.93 | 1.48e-05 | - | no |
| KW | 0 | ipr001611 | - | 11/200 | 3.89 | 3.08e-05 | - | no |
| KW | 0 | kinase | - | 24/200 | 2.27 | 5.84e-05 | - | no |
| KW | 0 | processes | - | 10/200 | 3.30 | 2.59e-04 | - | no |
| KW | 0 | leucine | - | 14/200 | 2.67 | 2.81e-04 | - | no |
| KW | 0 | ipr011009 | - | 16/200 | 2.47 | 2.92e-04 | - | no |
| KW | 0 | ipr017441 | - | 12/200 | 2.79 | 4.18e-04 | - | no |
| KW | 0 | amino | - | 19/200 | 2.21 | 4.29e-04 | - | no |
| KW | 0 | ipr000719 | - | 15/200 | 2.41 | 5.69e-04 | - | no |
| KW | 0 | region | - | 27/200 | 1.87 | 5.86e-04 | - | no |
| KW | 0 | receptor | - | 12/200 | 2.52 | 1.07e-03 | - | no |
| KW | 0 | ipr008271 | - | 12/200 | 2.46 | 1.35e-03 | - | no |
| KW | 0 | signaling | - | 10/200 | 2.69 | 1.40e-03 | - | no |
| KW | 0 | nucleotide | - | 14/200 | 2.20 | 1.95e-03 | - | no |
| KW | 0 | related | - | 42/200 | 1.50 | 2.62e-03 | 0 | yes |
| KW | 0 | hydrolase | - | 15/200 | 2.06 | 2.86e-03 | - | no |
| KW | 0 | threonine | - | 15/200 | 2.00 | 3.73e-03 | - | no |
| KW | 0 | associated | - | 14/200 | 2.05 | 3.80e-03 | - | no |
| KW | 0 | signal | - | 10/200 | 2.28 | 4.91e-03 | - | no |
| KW | 0 | function | - | 25/200 | 1.60 | 7.10e-03 | - | no |
| KW | 0 | dependent | - | 22/200 | 1.64 | 8.03e-03 | - | no |
| KW | 0 | serine | - | 16/200 | 1.80 | 8.42e-03 | - | no |
| KW | 0 | transferase | - | 12/200 | 1.96 | 9.10e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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