OMAT1P016910http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100169100000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P019590 | 0.940343 | - | AT5G63840 | RSW3 (RADIAL SWELLING 3) | - | - |
| OMAT1P020400 | 0.938523 | - | AT1G71220 | EBS1 (EMS-mutagenized bri1 suppressor 1) | - | - |
| OMAT2P100430 | 0.93839 | - | AT2G01970 | endomembrane protein 70, putative | - | - |
| OMAT1P115900 | 0.936217 | - | AT1G64650 | LOCATED IN: plasma membrane | - | - |
| OMAT4P010480 | 0.934916 | - | AT4G31480 | coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative | - | - |
| OMAT5P100440 | 0.929808 | - | AT5G02410 | DIE2/ALG10 family | - | - |
| OMAT5P005670 | 0.929188 | - | AT5G16300 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT1P023900 | 0.924371 | - | AT1G79990 | protein binding / structural molecule | - | - |
| OMAT5P108890 | 0.922658 | - | AT5G37310 | LOCATED IN: integral to membrane, Golgi apparatus, plant-type cell wall | - | - |
| OMAT5P107530 | 0.922536 | - | AT5G25100 | endomembrane protein 70, putative | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P117920 | -0.810302 | - | AT1G70780,AT1G70782 | [AT1G70780]unknown protein, [AT1G70782]CPuORF28 (Conserved peptide upstream open reading frame 28) | - | - |
| OMAT3P005730 | -0.797098 | - | AT3G15578 | unknown protein | AT3G15580 | APG8H (AUTOPHAGY 8H) |
| OMAT5P110420 | -0.790899 | - | AT5G43260 | chaperone protein dnaJ-related | - | - |
| OMAT4P104440 | -0.784048 | - | AT4G17840 | unknown protein | - | - |
| OMAT5P118640 | -0.774362 | - | AT5G67480 | BT4 (BTB AND TAZ DOMAIN PROTEIN 4) | - | - |
| OMAT1P118480 | -0.772749 | - | AT1G72680 | cinnamyl-alcohol dehydrogenase, putative | - | - |
| OMAT5P106710 | -0.770681 | - | AT5G23040 | CDF1 (CELL GROWTH DEFECT FACTOR 1) | - | - |
| OMAT2P012100 | -0.763116 | - | AT2G43820 | UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2) | - | - |
| OMAT2P109430 | -0.755685 | - | AT2G39000 | GCN5-related N-acetyltransferase (GNAT) family protein | - | - |
| OMAT1P103320 | -0.754699 | - | AT1G10500 | ATCPISCA (chloroplast-localized IscA-like protein) | AT1G10490 | unknown protein |
Get whole results
Over-Representation Analysis Result
| p-value | <= 5.06e-32 | :20 terms with high significance | |
| 5.06e-32 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0023033 | signaling pathway | 12/200 | 3.55 | 3.99e-05 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 10/200 | 2.97 | 6.15e-04 | - | no |
| B | 3 | GO:0006810 | transport | 19/200 | 1.85 | 3.41e-03 | - | yes |
| B | 3 | GO:0051234 | establishment of localization | 19/200 | 1.85 | 3.52e-03 | - | yes |
| B | 5 | GO:0006464 | protein modification process | 19/200 | 1.83 | 4.05e-03 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 11/200 | 2.11 | 6.45e-03 | - | no |
| C | 5 | GO:0005794 | Golgi apparatus | 23/200 | 17.54 | 2.56e-23 | - | yes |
| C | 3 | GO:0016020 | membrane | 79/200 | 2.88 | 2.68e-20 | 3.64E-21 | yes |
| C | 3 | GO:0044464 | cell part | 148/200 | 1.62 | 1.08e-16 | - | yes |
| C | 4 | GO:0005886 | plasma membrane | 43/200 | 3.47 | 1.31e-13 | 3.64E-21 | yes |
| C | 4 | GO:0005737 | cytoplasm | 73/200 | 1.95 | 9.22e-10 | - | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 69/200 | 1.99 | 1.46e-09 | - | yes |
| C | 3 | GO:0044425 | membrane part | 26/200 | 3.29 | 2.80e-08 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 85/200 | 1.67 | 4.91e-08 | - | yes |
| C | 3 | GO:0005622 | intracellular | 87/200 | 1.63 | 8.10e-08 | - | yes |
| C | 5 | GO:0016021 | integral to membrane | 15/200 | 4.88 | 9.70e-08 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 78/200 | 1.69 | 1.48e-07 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 74/200 | 1.68 | 4.18e-07 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 74/200 | 1.68 | 4.21e-07 | - | yes |
| C | 4 | GO:0031224 | intrinsic to membrane | 19/200 | 3.54 | 5.20e-07 | - | no |
| C | 3 | GO:0043234 | protein complex | 19/200 | 2.90 | 1.03e-05 | 0 | yes |
| C | 4 | GO:0005618 | cell wall | 12/200 | 3.61 | 3.32e-05 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 12/200 | 3.59 | 3.58e-05 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 25/200 | 1.74 | 2.37e-03 | - | yes |
| C | 3 | GO:0044422 | organelle part | 25/200 | 1.74 | 2.40e-03 | - | yes |
| M | 4 | GO:0016757 | transferase activity, transferring glycosyl groups | 16/200 | 5.49 | 7.33e-09 | - | no |
| M | 3 | GO:0016740 | transferase activity | 38/200 | 2.32 | 3.00e-07 | - | no |
| M | 5 | GO:0016758 | transferase activity, transferring hexosyl groups | 10/200 | 5.64 | 1.96e-06 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 25/200 | 1.89 | 7.44e-04 | 1.00E-12 | no |
| M | 3 | GO:0005515 | protein binding | 28/200 | 1.79 | 9.44e-04 | 5.00E-14 | yes |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 11/200 | 2.47 | 1.85e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 11/200 | 2.45 | 2.00e-03 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 19/200 | 1.83 | 3.93e-03 | - | no |
| PS | 5 | PO:0020038 | petiole | 171/200 | 2.25 | 7.77e-45 | - | yes |
| PS | 3 | PO:0009013 | meristem | 173/200 | 2.15 | 3.77e-43 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 174/200 | 2.11 | 2.16e-42 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 166/200 | 2.15 | 4.20e-39 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 165/200 | 2.12 | 7.69e-38 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 167/200 | 2.05 | 1.03e-36 | - | yes |
| PS | 4 | PO:0009025 | leaf | 175/200 | 1.90 | 7.41e-36 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 167/200 | 1.99 | 1.14e-34 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 167/200 | 1.94 | 4.06e-33 | - | yes |
| PS | 3 | PO:0009032 | petal | 168/200 | 1.92 | 8.49e-33 | - | yes |
| PS | 5 | PO:0008037 | seedling | 168/200 | 1.90 | 2.40e-32 | - | yes |
| PS | 3 | PO:0009005 | root | 168/200 | 1.87 | 3.96e-31 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 168/200 | 1.87 | 4.07e-31 | - | yes |
| PS | 4 | PO:0009047 | stem | 162/200 | 1.92 | 2.89e-30 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 161/200 | 1.92 | 7.66e-30 | - | yes |
| PS | 3 | PO:0009031 | sepal | 168/200 | 1.82 | 1.71e-29 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 150/200 | 2.04 | 4.42e-29 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 175/200 | 1.71 | 1.54e-28 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 168/200 | 1.78 | 3.31e-28 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 168/200 | 1.78 | 3.31e-28 | - | yes |
| PS | 4 | PO:0009009 | embryo | 169/200 | 1.75 | 1.75e-27 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 157/200 | 1.89 | 1.77e-27 | - | yes |
| PS | 3 | PO:0009010 | seed | 169/200 | 1.73 | 1.03e-26 | - | yes |
| PS | 4 | PO:0009001 | fruit | 169/200 | 1.72 | 2.17e-26 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 169/200 | 1.72 | 2.17e-26 | - | yes |
| PS | 3 | PO:0009006 | shoot | 176/200 | 1.62 | 1.30e-25 | - | yes |
| PS | 5 | PO:0009046 | flower | 169/200 | 1.62 | 5.92e-23 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 169/200 | 1.61 | 1.36e-22 | - | yes |
| PS | 5 | PO:0000349 | epidermal initial | 40/200 | 3.55 | 4.96e-13 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 39/200 | 3.62 | 5.00e-13 | - | yes |
| PS | 4 | PO:0000351 | guard mother cell | 39/200 | 3.61 | 5.76e-13 | - | yes |
| PS | 3 | PO:0000070 | meristemoid | 39/200 | 3.60 | 6.07e-13 | - | yes |
| PS | 4 | PO:0004011 | initial cell | 40/200 | 3.52 | 6.09e-13 | - | yes |
| PS | 3 | PO:0004010 | meristematic cell | 40/200 | 3.52 | 6.41e-13 | - | yes |
| PS | 3 | PO:0004013 | epidermal cell | 41/200 | 3.44 | 6.95e-13 | - | yes |
| PS | 5 | PO:0006016 | leaf epidermis | 39/200 | 3.51 | 1.41e-12 | - | yes |
| PS | 5 | PO:0006035 | shoot epidermis | 39/200 | 3.48 | 1.76e-12 | - | yes |
| PS | 4 | PO:0005679 | epidermis | 41/200 | 3.31 | 2.36e-12 | - | yes |
| PS | 3 | PO:0009014 | dermal tissue | 41/200 | 3.31 | 2.40e-12 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 50/200 | 1.54 | 5.13e-04 | - | yes |
| PS | 3 | PO:0020097 | generative cell | 50/200 | 1.54 | 5.13e-04 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 42/200 | 1.44 | 5.12e-03 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 165/200 | 2.15 | 1.76e-38 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 165/200 | 2.14 | 1.91e-38 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 167/200 | 2.10 | 4.03e-38 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 169/200 | 2.05 | 1.14e-37 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 167/200 | 2.04 | 3.93e-36 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 167/200 | 2.01 | 2.13e-35 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 171/200 | 1.89 | 2.38e-33 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 164/200 | 1.95 | 4.91e-32 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 164/200 | 1.95 | 5.06e-32 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 169/200 | 1.88 | 6.47e-32 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 164/200 | 1.94 | 1.32e-31 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 172/200 | 1.69 | 1.64e-26 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 168/200 | 1.73 | 1.74e-26 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 168/200 | 1.70 | 2.14e-25 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 172/200 | 1.64 | 9.12e-25 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 41/200 | 1.40 | 9.30e-03 | - | yes |
| KW | 0 | membrane | - | 81/200 | 3.04 | 2.21e-22 | 3.64E-21 | yes |
| KW | 0 | golgi | - | 22/200 | 13.25 | 1.28e-19 | - | yes |
| KW | 0 | apparatus | - | 16/200 | 16.22 | 2.18e-16 | - | no |
| KW | 0 | plasma | - | 40/200 | 3.49 | 8.41e-13 | 3.64E-21 | yes |
| KW | 0 | integral | - | 19/200 | 5.33 | 6.32e-10 | - | no |
| KW | 0 | vesicle | - | 10/200 | 6.81 | 3.04e-07 | - | yes |
| KW | 0 | groups | - | 14/200 | 4.29 | 1.19e-06 | - | no |
| KW | 0 | transferring | - | 14/200 | 4.20 | 1.52e-06 | - | no |
| KW | 0 | transferase | - | 19/200 | 3.10 | 3.99e-06 | - | no |
| KW | 0 | glycosyl | - | 14/200 | 3.28 | 2.85e-05 | - | no |
| KW | 0 | complex | - | 21/200 | 2.48 | 4.40e-05 | 0 | yes |
| KW | 0 | biosynthetic | - | 18/200 | 2.52 | 1.11e-04 | - | no |
| KW | 0 | mediated | - | 11/200 | 3.11 | 2.52e-04 | - | yes |
| KW | 0 | putative | - | 39/200 | 1.69 | 3.64e-04 | 0 | yes |
| KW | 0 | transmembrane | - | 17/200 | 2.34 | 3.91e-04 | - | no |
| KW | 0 | amino | - | 19/200 | 2.21 | 4.29e-04 | - | no |
| KW | 0 | nucleotide | - | 15/200 | 2.36 | 7.11e-04 | 1.00E-12 | no |
| KW | 0 | transport | - | 20/200 | 2.06 | 7.94e-04 | - | yes |
| KW | 0 | alpha | - | 16/200 | 2.19 | 1.12e-03 | 0 | yes |
| KW | 0 | serine | - | 18/200 | 2.02 | 1.63e-03 | 6.00E-05 | no |
| KW | 0 | subunit | - | 15/200 | 2.05 | 3.00e-03 | 0 | yes |
| KW | 0 | associated | - | 14/200 | 2.05 | 3.80e-03 | 1.00E-07 | yes |
| KW | 0 | ipr011009 | - | 13/200 | 2.01 | 5.76e-03 | - | no |
| KW | 0 | threonine | - | 14/200 | 1.87 | 8.71e-03 | 6.00E-05 | no |
| KW | 0 | receptor | - | 10/200 | 2.10 | 8.73e-03 | 3.00E-09 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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