OMAT1P018130http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u100181300000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P006480 | 0.887219 | - | AT5G18750 | DNAJ heat shock N-terminal domain-containing protein | - | - |
| OMAT5P019460 | 0.877644 | - | AT5G63550 | EXPRESSED IN: guard cell | - | - |
| OMAT3P000500 | 0.85894 | - | AT3G02065 | DEAD/DEAH box helicase family protein | - | - |
| OMAT5P012840 | 0.842509 | - | AT5G45790 | ubiquitin thiolesterase | - | - |
| OMAT5P105790 | 0.842147 | - | - | - | - | - |
| OMAT5P010120 | 0.842002 | - | AT5G38040 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | - | - |
| OMAT1P005880 | 0.84158 | - | AT1G16190 | DNA repair protein RAD23, putative | - | - |
| OMAT5P001210 | 0.841418 | - | AT5G04060 | dehydration-responsive protein-related | - | - |
| OMAT1P018780 | 0.837598 | - | AT1G67420 | peptidase | - | - |
| OMAT1P008800 | 0.833962 | - | AT1G23940 | adaptin family protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P108690 | -0.9043 | - | - | - | AT3G26650 | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) |
| OMAT4P101470 | -0.900346 | - | - | - | AT4G05150 | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein |
| OMAT5P108030 | -0.89177 | - | - | - | AT5G27280 | zinc finger (DNL type) family protein |
| OMAT4P108740 | -0.890649 | - | AT4G30920 | cytosol aminopeptidase family protein | - | - |
| OMAT1P111730 | -0.889216 | - | AT1G48450 | unknown protein | - | - |
| OMAT1P001350 | -0.88262 | - | - | - | AT1G04400 | CRY2 (CRYPTOCHROME 2) |
| OMAT2P001600 | -0.882216 | - | - | - | AT2G13360 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) |
| OMAT2P101890 | -0.879511 | - | - | - | AT2G15970 | COR413-PM1 |
| OMAT2P101100 | -0.87551 | - | - | - | AT2G05540 | glycine-rich protein |
| OMAT1P007895 | -0.875074 | - | AT1G21670 | INVOLVED IN: proteolysis | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 6.11e-13 | :20 terms with high significance | |
| 6.11e-13 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006996 | organelle organization | 12/200 | 3.60 | 3.51e-05 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 35/200 | 1.76 | 3.19e-04 | - | no |
| B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 10/200 | 2.88 | 8.08e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 33/200 | 1.70 | 9.30e-04 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 26/200 | 1.73 | 2.23e-03 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 63/200 | 1.33 | 4.17e-03 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 53/200 | 1.37 | 5.16e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 65/200 | 1.31 | 5.38e-03 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 48/200 | 1.36 | 8.59e-03 | - | no |
| C | 3 | GO:0005622 | intracellular | 85/200 | 1.60 | 3.83e-07 | 8.12E-16 | no |
| C | 3 | GO:0044424 | intracellular part | 82/200 | 1.61 | 5.16e-07 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 74/200 | 1.60 | 3.09e-06 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 69/200 | 1.57 | 1.61e-05 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 69/200 | 1.57 | 1.62e-05 | - | no |
| C | 3 | GO:0044464 | cell part | 116/200 | 1.27 | 1.90e-04 | 2.86E-16 | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 53/200 | 1.53 | 4.30e-04 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 15/200 | 2.34 | 7.55e-04 | 5.63E-14 | no |
| C | 4 | GO:0005737 | cytoplasm | 55/200 | 1.47 | 8.61e-04 | 2.55E-16 | no |
| C | 3 | GO:0044446 | intracellular organelle part | 24/200 | 1.67 | 4.76e-03 | - | no |
| C | 3 | GO:0044422 | organelle part | 24/200 | 1.67 | 4.81e-03 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 21/200 | 1.70 | 6.53e-03 | 2.97E-16 | no |
| M | 4 | GO:0003677 | DNA binding | 23/200 | 1.66 | 6.11e-03 | 0 | no |
| PS | 5 | PO:0009052 | pedicel | 138/200 | 1.70 | 1.30e-16 | 2.36E-19 | yes |
| PS | 3 | PO:0009013 | meristem | 136/200 | 1.69 | 4.51e-16 | 6.26E-112 | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 133/200 | 1.71 | 6.45e-16 | 1.88E-37 | yes |
| PS | 5 | PO:0009027 | megasporophyll | 138/200 | 1.64 | 2.97e-15 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 140/200 | 1.63 | 3.14e-15 | 3.91E-33 | yes |
| PS | 4 | PO:0009047 | stem | 137/200 | 1.62 | 1.47e-14 | 4.48E-59 | yes |
| PS | 3 | PO:0009032 | petal | 140/200 | 1.60 | 1.88e-14 | 1.28E-18 | yes |
| PS | 3 | PO:0009031 | sepal | 144/200 | 1.56 | 3.45e-14 | 5.45E-20 | yes |
| PS | 4 | PO:0009001 | fruit | 149/200 | 1.52 | 6.57e-14 | 5.45E-17 | yes |
| PS | 3 | PO:0006342 | infructescence | 149/200 | 1.52 | 6.57e-14 | - | yes |
| PS | 4 | PO:0009009 | embryo | 147/200 | 1.52 | 1.05e-13 | 1.46E-22 | yes |
| PS | 3 | PO:0009010 | seed | 148/200 | 1.51 | 1.20e-13 | 3.72E-17 | yes |
| PS | 3 | PO:0020091 | male gametophyte | 133/200 | 1.60 | 2.48e-13 | 3.53E-19 | yes |
| PS | 3 | PO:0009005 | root | 139/200 | 1.54 | 6.82e-13 | 5.21E-46 | yes |
| PS | 4 | PO:0009026 | sporophyll | 139/200 | 1.54 | 6.95e-13 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 143/200 | 1.52 | 7.79e-13 | 3.64E-20 | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 143/200 | 1.52 | 7.79e-13 | - | yes |
| PS | 5 | PO:0008037 | seedling | 137/200 | 1.55 | 9.64e-13 | 1.16E-17 | yes |
| PS | 5 | PO:0020039 | leaf lamina | 130/200 | 1.58 | 3.30e-12 | 3.45E-19 | yes |
| PS | 5 | PO:0000013 | cauline leaf | 124/200 | 1.61 | 6.62e-12 | 9.45E-20 | yes |
| PS | 4 | PO:0009025 | leaf | 138/200 | 1.50 | 1.35e-11 | 6.64E-24 | yes |
| PS | 5 | PO:0009046 | flower | 148/200 | 1.42 | 5.17e-11 | 1.37E-96 | yes |
| PS | 4 | PO:0009049 | inflorescence | 148/200 | 1.41 | 9.14e-11 | 9.20E-44 | yes |
| PS | 5 | PO:0009028 | microsporophyll | 128/200 | 1.53 | 9.47e-11 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 146/200 | 1.42 | 9.74e-11 | - | yes |
| PS | 5 | PO:0020038 | petiole | 119/200 | 1.56 | 2.51e-10 | 5.63E-14 | yes |
| PS | 3 | PO:0009006 | shoot | 150/200 | 1.38 | 4.14e-10 | 6.26E-112 | yes |
| PS | 4 | PO:0020030 | cotyledon | 114/200 | 1.55 | 1.70e-09 | 4.99E-18 | yes |
| PS | 3 | PO:0000084 | sperm cell | 64/200 | 1.97 | 9.97e-09 | 5.63E-14 | no |
| PS | 3 | PO:0020097 | generative cell | 64/200 | 1.97 | 9.97e-09 | 5.63E-14 | no |
| PS | 4 | PO:0006345 | pollen tube | 50/200 | 1.72 | 3.36e-05 | 1.60E-18 | no |
| PS | 4 | PO:0000293 | guard cell | 21/200 | 1.95 | 1.20e-03 | 5.63E-14 | no |
| PS | 4 | PO:0000351 | guard mother cell | 21/200 | 1.94 | 1.27e-03 | 5.63E-14 | no |
| PS | 3 | PO:0000070 | meristemoid | 21/200 | 1.94 | 1.29e-03 | 5.63E-14 | no |
| PS | 5 | PO:0006016 | leaf epidermis | 21/200 | 1.89 | 1.81e-03 | 5.63E-14 | no |
| PS | 5 | PO:0006035 | shoot epidermis | 21/200 | 1.88 | 1.98e-03 | 5.63E-14 | no |
| PS | 5 | PO:0000349 | epidermal initial | 21/200 | 1.86 | 2.15e-03 | - | no |
| PS | 4 | PO:0004011 | initial cell | 21/200 | 1.85 | 2.33e-03 | 2.07E-16 | no |
| PS | 3 | PO:0004010 | meristematic cell | 21/200 | 1.85 | 2.37e-03 | 6.69E-24 | no |
| PS | 3 | PO:0004013 | epidermal cell | 21/200 | 1.76 | 4.21e-03 | 5.63E-14 | no |
| PS | 4 | PO:0005679 | epidermis | 21/200 | 1.70 | 6.49e-03 | 5.63E-14 | no |
| PS | 3 | PO:0009014 | dermal tissue | 21/200 | 1.70 | 6.53e-03 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 140/200 | 1.69 | 8.84e-17 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 139/200 | 1.69 | 1.40e-16 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 138/200 | 1.68 | 3.19e-16 | 7.78E-19 | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 135/200 | 1.70 | 5.67e-16 | 5.63E-14 | yes |
| PG | 3 | PO:0001170 | seed development stages | 144/200 | 1.59 | 4.18e-15 | 1.04E-18 | yes |
| PG | 4 | PO:0007631 | embryo development stages | 143/200 | 1.59 | 8.68e-15 | 1.98E-17 | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 126/200 | 1.64 | 6.11e-13 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 126/200 | 1.64 | 6.40e-13 | 7.56E-19 | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 149/200 | 1.46 | 2.38e-12 | 6.64E-24 | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 146/200 | 1.48 | 2.62e-12 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 142/200 | 1.46 | 2.96e-11 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 149/200 | 1.42 | 3.59e-11 | 6.64E-24 | yes |
| PG | 5 | PO:0007133 | leaf production | 127/200 | 1.51 | 3.06e-10 | 4.07E-18 | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 127/200 | 1.51 | 3.11e-10 | 1.93E-19 | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 127/200 | 1.50 | 5.26e-10 | 7.73E-23 | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 54/200 | 1.84 | 1.74e-06 | - | no |
| KW | 0 | catalytic | - | 23/200 | 2.26 | 8.70e-05 | 2.44E-16 | no |
| KW | 0 | nuclear | - | 10/200 | 3.25 | 2.91e-04 | 9.36E-16 | no |
| KW | 0 | subunit | - | 16/200 | 2.18 | 1.18e-03 | 4.21E-16 | no |
| KW | 0 | motif | - | 12/200 | 2.47 | 1.30e-03 | 1.28E-16 | no |
| KW | 0 | mitochondrion | - | 13/200 | 2.37 | 1.33e-03 | 5.63E-14 | no |
| KW | 0 | terminal | - | 30/200 | 1.56 | 5.56e-03 | 3.00E-58 | yes |
| KW | 0 | plasma | - | 20/200 | 1.74 | 5.56e-03 | 1.69E-15 | no |
| KW | 0 | metabolic | - | 20/200 | 1.74 | 5.69e-03 | 5.63E-14 | no |
| KW | 0 | process | - | 31/200 | 1.51 | 7.38e-03 | 9.34E-16 | no |
| KW | 0 | oxidoreductase | - | 10/200 | 2.15 | 7.56e-03 | 5.63E-14 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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