OMAT1P100880http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101008800000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P105770 | 0.918326 | - | - | - | AT1G17860 | trypsin and protease inhibitor family protein / Kunitz family protein |
| OMAT5P001020 | 0.90755 | - | AT5G03545 | unknown protein | - | - |
| OMAT1P112770 | 0.907339 | - | AT1G52200 | unknown protein | - | - |
| OMAT3P103180 | 0.904427 | - | AT3G09925 | pollen Ole e 1 allergen and extensin family protein | - | - |
| OMAT1P107500 | 0.893908 | - | AT1G23140 | C2 domain-containing protein | - | - |
| OMAT3P109490 | 0.874003 | - | AT3G29034 | unknown protein | - | - |
| OMAT3P109710 | 0.870227 | - | AT3G32980 | peroxidase 32 (PER32) (P32) (PRXR3) | - | - |
| OMAT4P100990 | 0.868387 | - | AT4G02850 | phenazine biosynthesis PhzC/PhzF family protein | - | - |
| OMAT1P002470 | 0.865109 | - | AT1G07610 | MT1C | - | - |
| OMAT5P106430 | 0.865088 | - | AT5G22140 | pyridine nucleotide-disulphide oxidoreductase family protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P016960 | -0.823511 | - | AT5G56910 | INVOLVED IN: biological_process unknown | - | - |
| OMAT5P101270 | -0.785717 | - | AT5G05060 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT1P003390 | -0.774239 | - | AT1G09795 | ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) | - | - |
| OMAT4P009000 | -0.740451 | - | AT4G27900 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT2P010140 | -0.733782 | - | AT2G38670 | PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) | - | - |
| OMAT3P000730 | -0.720017 | - | AT3G02600 | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) | - | - |
| OMAT5P000520 | -0.713493 | - | AT5G02240 | binding / catalytic/ coenzyme binding | - | - |
| OMAT1P005740 | -0.710066 | - | AT1G15940 | binding | - | - |
| OMAT3P001060 | -0.703942 | - | AT3G03210 | unknown protein | - | - |
| OMAT2P006300 | -0.702419 | - | AT2G28190 | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.05e-09 | :20 terms with high significance | |
| 2.05e-09 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006950 | response to stress | 42/200 | 3.39 | 5.86e-13 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 40/200 | 3.51 | 7.10e-13 | - | yes |
| B | 4 | GO:0006979 | response to oxidative stress | 12/200 | 7.34 | 1.25e-08 | - | no |
| B | 3 | GO:0006955 | immune response | 12/200 | 6.33 | 7.00e-08 | - | no |
| B | 4 | GO:0006952 | defense response | 17/200 | 3.73 | 8.65e-07 | - | no |
| B | 4 | GO:0045087 | innate immune response | 10/200 | 5.64 | 1.96e-06 | - | no |
| B | 3 | GO:0051707 | response to other organism | 13/200 | 3.88 | 7.98e-06 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 13/200 | 3.60 | 1.86e-05 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 18/200 | 2.69 | 4.65e-05 | - | yes |
| B | 3 | GO:0023046 | signaling process | 11/200 | 3.39 | 1.13e-04 | - | no |
| B | 3 | GO:0023060 | signal transmission | 11/200 | 3.39 | 1.13e-04 | - | no |
| B | 3 | GO:0023033 | signaling pathway | 11/200 | 3.25 | 1.67e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 30/200 | 1.73 | 1.08e-03 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 27/200 | 1.77 | 1.35e-03 | - | no |
| B | 3 | GO:0051716 | cellular response to stimulus | 11/200 | 2.49 | 1.75e-03 | - | no |
| B | 5 | GO:0006464 | protein modification process | 19/200 | 1.83 | 4.05e-03 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 10/200 | 2.12 | 8.35e-03 | - | yes |
| C | 3 | GO:0044464 | cell part | 141/200 | 1.54 | 3.78e-13 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 55/200 | 2.26 | 1.14e-09 | - | no |
| C | 4 | GO:0005618 | cell wall | 12/200 | 3.61 | 3.32e-05 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 12/200 | 3.59 | 3.58e-05 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 27/200 | 2.18 | 4.63e-05 | - | no |
| C | 3 | GO:0016020 | membrane | 45/200 | 1.64 | 2.42e-04 | - | no |
| C | 5 | GO:0005773 | vacuole | 10/200 | 2.90 | 7.64e-04 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 12/200 | 2.24 | 3.06e-03 | - | no |
| M | 4 | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | 12/200 | 19.19 | 6.88e-14 | - | no |
| M | 3 | GO:0004601 | peroxidase activity | 12/200 | 19.19 | 6.88e-14 | - | no |
| M | 4 | GO:0020037 | heme binding | 14/200 | 8.00 | 3.24e-10 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 30/200 | 3.56 | 3.93e-10 | - | yes |
| M | 3 | GO:0046906 | tetrapyrrole binding | 14/200 | 7.34 | 1.05e-09 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 11/200 | 2.50 | 1.71e-03 | - | no |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 12/200 | 2.32 | 2.22e-03 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 19/200 | 1.88 | 2.88e-03 | - | no |
| M | 4 | GO:0043169 | cation binding | 23/200 | 1.60 | 9.41e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 23/200 | 1.60 | 9.41e-03 | - | no |
| PS | 3 | PO:0009005 | root | 151/200 | 1.68 | 3.42e-19 | - | yes |
| PS | 5 | PO:0008037 | seedling | 129/200 | 1.46 | 2.08e-09 | - | yes |
| PS | 4 | PO:0009009 | embryo | 133/200 | 1.38 | 6.79e-08 | - | yes |
| PS | 3 | PO:0009010 | seed | 133/200 | 1.36 | 1.70e-07 | - | yes |
| PS | 4 | PO:0009001 | fruit | 133/200 | 1.35 | 2.47e-07 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 133/200 | 1.35 | 2.47e-07 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 91/200 | 1.24 | 4.28e-03 | - | yes |
| PS | 4 | PO:0009047 | stem | 102/200 | 1.21 | 4.81e-03 | - | yes |
| PS | 3 | PO:0009006 | shoot | 126/200 | 1.16 | 5.10e-03 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 119/200 | 1.16 | 7.94e-03 | - | yes |
| KW | 0 | hypocotyl | - | 27/200 | 11.57 | 5.54e-22 | - | no |
| KW | 0 | response | - | 65/200 | 3.62 | 1.51e-21 | - | yes |
| KW | 0 | peroxidase | - | 12/200 | 16.91 | 3.64e-13 | - | no |
| KW | 0 | fungal | - | 12/200 | 15.23 | 1.42e-12 | - | no |
| KW | 0 | stress | - | 23/200 | 4.90 | 7.17e-11 | - | no |
| KW | 0 | system | - | 57/200 | 2.35 | 1.17e-10 | - | no |
| KW | 0 | endomembrane | - | 55/200 | 2.33 | 4.10e-10 | - | no |
| KW | 0 | bacterial | - | 13/200 | 8.61 | 4.60e-10 | - | no |
| KW | 0 | electron | - | 19/200 | 5.34 | 6.14e-10 | - | yes |
| KW | 0 | oxidative | - | 12/200 | 8.53 | 2.05e-09 | - | no |
| KW | 0 | carrier | - | 19/200 | 4.74 | 4.68e-09 | - | yes |
| KW | 0 | channel | - | 11/200 | 8.43 | 9.16e-09 | - | no |
| KW | 0 | allergen | - | 10/200 | 8.80 | 2.28e-08 | - | no |
| KW | 0 | resistance | - | 14/200 | 4.92 | 2.10e-07 | - | no |
| KW | 0 | class | - | 19/200 | 3.17 | 2.80e-06 | - | no |
| KW | 0 | plasma | - | 27/200 | 2.36 | 1.16e-05 | - | no |
| KW | 0 | visible | - | 13/200 | 3.51 | 2.44e-05 | - | no |
| KW | 0 | transduction | - | 12/200 | 3.63 | 3.20e-05 | - | no |
| KW | 0 | membrane | - | 46/200 | 1.73 | 6.11e-05 | - | no |
| KW | 0 | transcription | - | 29/200 | 2.00 | 1.23e-04 | - | no |
| KW | 0 | leaves | - | 14/200 | 2.83 | 1.50e-04 | - | no |
| KW | 0 | major | - | 10/200 | 3.50 | 1.56e-04 | - | no |
| KW | 0 | putative | - | 40/200 | 1.73 | 1.80e-04 | - | no |
| KW | 0 | signal | - | 12/200 | 2.73 | 5.14e-04 | - | no |
| KW | 0 | defense | - | 10/200 | 2.87 | 8.31e-04 | - | no |
| KW | 0 | region | - | 26/200 | 1.80 | 1.27e-03 | - | no |
| KW | 0 | signaling | - | 10/200 | 2.69 | 1.40e-03 | - | no |
| KW | 0 | cotyledon | - | 12/200 | 2.28 | 2.60e-03 | - | no |
| KW | 0 | expansion | - | 24/200 | 1.63 | 6.49e-03 | - | no |
| KW | 0 | transmembrane | - | 14/200 | 1.93 | 6.56e-03 | - | no |
| KW | 0 | encodes | - | 37/200 | 1.45 | 7.61e-03 | - | no |
| KW | 0 | conserved | - | 22/200 | 1.63 | 9.07e-03 | - | no |
| KW | 0 | kinase | - | 18/200 | 1.71 | 9.82e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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