OMAT1P101380http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101013800000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P019300 | 0.962531 | - | AT1G68510 | LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42) | - | - |
| OMAT1P106620 | 0.961527 | - | AT1G20500 | 4-coumarate-CoA ligase | - | - |
| OMAT5P017400 | 0.96018 | - | AT5G57920 | plastocyanin-like domain-containing protein | - | - |
| OMAT2P101660 | 0.95623 | - | AT2G14690 | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds | - | - |
| OMAT3P109140 | 0.955973 | - | AT3G27785 | MYB118 | - | - |
| OMAT3P001430 | 0.955967 | - | AT3G04300 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P006150 | 0.954307 | - | AT5G17800 | AtMYB56 (myb domain protein 56) | - | - |
| OMAT5P100880 | 0.953924 | - | AT5G03820 | GDSL-motif lipase/hydrolase family protein | - | - |
| OMAT5P004250 | 0.953445 | - | AT5G12460 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT3P102850 | 0.953058 | - | AT3G08900 | RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3) | AT3G08890 | unknown protein |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P012960 | -0.657179 | - | AT2G45960 | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) | - | - |
| OMAT1P018980 | -0.636739 | - | - | - | AT1G67870 | glycine-rich protein |
| OMAT1P100160 | -0.634869 | - | AT1G01440 | extra-large G-protein-related | - | - |
| OMAT1P116370 | -0.62735 | - | - | - | AT1G66180 | aspartyl protease family protein |
| OMAT2P005910 | -0.627067 | - | AT2G27050 | EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) | - | - |
| OMAT3P111120 | -0.625502 | - | AT3G48560 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) | - | - |
| OMAT3P012730 | -0.61632 | - | - | - | AT3G48560 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) |
| OMAT2P001490 | -0.615604 | - | - | - | AT2G07180 | protein kinase, putative |
| OMAT1P002050 | -0.606431 | - | AT1G06410 | ATTPS7 | - | - |
| OMAT3P109570 | -0.601579 | - | AT3G29400 | ATEXO70E1 (exocyst subunit EXO70 family protein E1) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0006629 | lipid metabolic process | 17/200 | 3.91 | 4.48e-07 | - | yes |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 16/200 | 3.07 | 2.15e-05 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 11/200 | 3.56 | 7.26e-05 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 21/200 | 2.34 | 1.04e-04 | - | yes |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 21/200 | 2.09 | 4.88e-04 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 21/200 | 2.09 | 4.88e-04 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 21/200 | 2.07 | 5.45e-04 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 12/200 | 2.64 | 7.02e-04 | - | yes |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 13/200 | 2.49 | 8.39e-04 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 20/200 | 2.03 | 9.27e-04 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 20/200 | 1.99 | 1.15e-03 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 21/200 | 1.94 | 1.28e-03 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 13/200 | 2.37 | 1.31e-03 | - | no |
| B | 5 | GO:0006350 | transcription | 20/200 | 1.96 | 1.44e-03 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 11/200 | 2.50 | 1.69e-03 | - | yes |
| B | 3 | GO:0048856 | anatomical structure development | 18/200 | 2.01 | 1.70e-03 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 11/200 | 2.49 | 1.73e-03 | - | yes |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 11/200 | 2.45 | 1.98e-03 | - | yes |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 20/200 | 1.90 | 2.10e-03 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 20/200 | 1.88 | 2.41e-03 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 20/200 | 1.83 | 3.30e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 21/200 | 1.78 | 3.63e-03 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 19/200 | 1.79 | 5.05e-03 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 12/200 | 2.03 | 6.85e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 68/200 | 2.80 | 1.61e-16 | - | no |
| C | 3 | GO:0044464 | cell part | 136/200 | 1.49 | 6.20e-11 | - | yes |
| M | 5 | GO:0004091 | carboxylesterase activity | 13/200 | 6.49 | 1.72e-08 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 24/200 | 2.85 | 1.29e-06 | - | yes |
| M | 3 | GO:0003700 | transcription factor activity | 24/200 | 2.38 | 2.85e-05 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 16/200 | 2.69 | 1.09e-04 | - | no |
| M | 4 | GO:0043169 | cation binding | 25/200 | 1.74 | 2.44e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 25/200 | 1.74 | 2.44e-03 | 0 | no |
| M | 4 | GO:0003677 | DNA binding | 24/200 | 1.73 | 3.06e-03 | 0 | no |
| M | 3 | GO:0016787 | hydrolase activity | 26/200 | 1.66 | 3.78e-03 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 22/200 | 1.62 | 9.34e-03 | - | no |
| KW | 0 | system | - | 70/200 | 2.89 | 8.73e-18 | 2.91E-15 | no |
| KW | 0 | endomembrane | - | 67/200 | 2.83 | 1.54e-16 | - | no |
| KW | 0 | fruit | - | 10/200 | 13.97 | 1.69e-10 | - | no |
| KW | 0 | carboxylesterase | - | 11/200 | 11.72 | 2.12e-10 | - | no |
| KW | 0 | process | - | 48/200 | 2.34 | 5.28e-09 | - | yes |
| KW | 0 | glycosyl | - | 19/200 | 4.46 | 1.30e-08 | - | no |
| KW | 0 | bonds | - | 10/200 | 8.31 | 4.08e-08 | - | no |
| KW | 0 | acting | - | 14/200 | 5.20 | 1.05e-07 | - | no |
| KW | 0 | metabolic | - | 30/200 | 2.61 | 4.62e-07 | - | no |
| KW | 0 | hydrolase | - | 22/200 | 3.02 | 1.27e-06 | - | no |
| KW | 0 | lipid | - | 14/200 | 4.08 | 2.20e-06 | - | no |
| KW | 0 | stage | - | 39/200 | 2.01 | 7.40e-06 | - | no |
| KW | 0 | differentiation | - | 32/200 | 2.12 | 1.81e-05 | - | no |
| KW | 0 | oxidoreductase | - | 15/200 | 3.22 | 2.06e-05 | - | no |
| KW | 0 | globular | - | 13/200 | 3.46 | 2.81e-05 | - | no |
| KW | 0 | biosynthetic | - | 19/200 | 2.66 | 3.59e-05 | - | yes |
| KW | 0 | anthesis | - | 28/200 | 2.13 | 5.12e-05 | - | no |
| KW | 0 | inhibitor | - | 11/200 | 3.68 | 5.27e-05 | - | no |
| KW | 0 | carrier | - | 13/200 | 3.24 | 5.75e-05 | - | no |
| KW | 0 | groups | - | 11/200 | 3.37 | 1.21e-04 | - | no |
| KW | 0 | petal | - | 29/200 | 1.99 | 1.33e-04 | - | no |
| KW | 0 | transferring | - | 11/200 | 3.30 | 1.46e-04 | - | no |
| KW | 0 | expansion | - | 29/200 | 1.97 | 1.52e-04 | - | no |
| KW | 0 | electron | - | 11/200 | 3.09 | 2.68e-04 | - | no |
| KW | 0 | regulation | - | 26/200 | 1.97 | 3.31e-04 | - | no |
| KW | 0 | encodes | - | 42/200 | 1.65 | 3.84e-04 | - | yes |
| KW | 0 | synthase | - | 12/200 | 2.73 | 5.14e-04 | 3.53E-16 | no |
| KW | 0 | member | - | 22/200 | 2.01 | 6.51e-04 | - | yes |
| KW | 0 | development | - | 16/200 | 2.29 | 6.89e-04 | - | no |
| KW | 0 | sequence | - | 10/200 | 2.63 | 1.65e-03 | - | no |
| KW | 0 | transcription | - | 25/200 | 1.72 | 2.82e-03 | - | no |
| KW | 0 | embryo | - | 14/200 | 2.02 | 4.43e-03 | - | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | - | yes |
| KW | 0 | cotyledon | - | 11/200 | 2.09 | 6.98e-03 | - | no |
| KW | 0 | group | - | 11/200 | 2.04 | 8.27e-03 | 4.00E-15 | no |
| KW | 0 | factor | - | 27/200 | 1.54 | 9.02e-03 | - | no |
| KW | 0 | transferase | - | 12/200 | 1.96 | 9.10e-03 | - | no |
| KW | 0 | expression | - | 10/200 | 2.07 | 9.78e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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