OMAT1P101510http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101015100000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P002250 | 0.996661 | - | AT2G16586 | unknown protein | - | - |
| OMAT3P005840 | 0.995902 | - | AT3G15830 | phosphatidic acid phosphatase-related / PAP2-related | - | - |
| OMAT4P001010 | 0.995819 | - | AT4G02650,AT4G02655 | [AT4G02650]epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related, [AT4G02655]unknown protein | - | - |
| OMAT2P104240 | 0.995616 | - | AT2G23800 | GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2) | - | - |
| OMAT5P110440 | 0.994836 | - | AT5G43300 | glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase | - | - |
| OMAT2P011360 | 0.993578 | - | AT2G41905 | unknown protein | - | - |
| OMAT3P014880 | 0.992432 | - | AT3G54240 | hydrolase, alpha/beta fold family protein | - | - |
| OMAT4P009130 | 0.992348 | - | AT4G28280 | unknown protein | - | - |
| OMAT2P005370 | 0.992304 | - | AT2G25600 | SPIK (Shaker Pollen Inward K+ channel) | - | - |
| OMAT5P014345 | 0.992217 | - | AT5G50030 | invertase/pectin methylesterase inhibitor family protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P105640 | -0.565431 | - | AT3G16640 | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | - | - |
| OMAT1P002175 | -0.565383 | - | AT1G06650 | 2-oxoglutarate-dependent dioxygenase, putative | - | - |
| OMAT2P101680 | -0.550709 | - | AT2G14910 | unknown protein | - | - |
| OMAT3P008640 | -0.543993 | - | AT3G22890 | APS1 (ATP SULFURYLASE 1) | - | - |
| OMAT5P106490 | -0.532779 | - | AT5G22360 | ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) | - | - |
| OMAT4P103400 | -0.526144 | - | AT4G14880 | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) | - | - |
| OMAT5P110840 | -0.519741 | - | AT5G44290 | protein kinase family protein | - | - |
| OMAT2P007170 | -0.517964 | - | - | - | AT2G30490 | C4H (CINNAMATE-4-HYDROXYLASE) |
| OMAT3P010710 | -0.510198 | - | AT3G28715 | H+-transporting two-sector ATPase, putative | - | - |
| OMAT2P102080 | -0.489235 | - | - | - | AT2G16600 | ROC3 |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.31e-19 | :20 terms with high significance | |
| 3.31e-19 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0042545 | cell wall modification | 11/200 | 14.18 | 2.27e-11 | - | no |
| B | 3 | GO:0071555 | cell wall organization | 11/200 | 11.02 | 4.36e-10 | - | no |
| B | 3 | GO:0048610 | reproductive cellular process | 10/200 | 11.71 | 1.13e-09 | - | no |
| B | 3 | GO:0032989 | cellular component morphogenesis | 10/200 | 5.98 | 1.10e-06 | - | no |
| B | 4 | GO:0030154 | cell differentiation | 10/200 | 5.30 | 3.56e-06 | - | no |
| B | 5 | GO:0042157 | lipoprotein metabolic process | 12/200 | 4.42 | 3.94e-06 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 12/200 | 4.32 | 5.11e-06 | - | no |
| B | 5 | GO:0006464 | protein modification process | 23/200 | 2.21 | 1.25e-04 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 14/200 | 2.69 | 2.58e-04 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 23/200 | 2.03 | 4.41e-04 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 10/200 | 2.97 | 6.15e-04 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 15/200 | 2.26 | 1.11e-03 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 15/200 | 2.26 | 1.12e-03 | - | no |
| B | 3 | GO:0065008 | regulation of biological quality | 10/200 | 2.68 | 1.43e-03 | - | no |
| B | 3 | GO:0022414 | reproductive process | 12/200 | 1.99 | 7.92e-03 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 11/200 | 2.00 | 9.82e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 78/200 | 3.21 | 6.71e-23 | - | no |
| C | 3 | GO:0044464 | cell part | 135/200 | 1.48 | 1.61e-10 | - | no |
| C | 5 | GO:0009505 | plant-type cell wall | 11/200 | 6.98 | 7.33e-08 | - | no |
| C | 3 | GO:0048046 | apoplast | 10/200 | 5.07 | 5.39e-06 | - | no |
| C | 4 | GO:0005618 | cell wall | 11/200 | 3.31 | 1.41e-04 | - | no |
| C | 3 | GO:0044425 | membrane part | 19/200 | 2.40 | 1.43e-04 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 11/200 | 3.29 | 1.51e-04 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 14/200 | 2.61 | 3.53e-04 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 23/200 | 11.48 | 5.89e-19 | - | no |
| M | 3 | GO:0004857 | enzyme inhibitor activity | 18/200 | 17.20 | 1.31e-18 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 29/200 | 4.88 | 3.34e-13 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 42/200 | 2.69 | 9.37e-10 | - | no |
| M | 5 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | 10/200 | 4.04 | 4.43e-05 | - | no |
| M | 4 | GO:0016798 | hydrolase activity, acting on glycosyl bonds | 10/200 | 3.76 | 8.30e-05 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 15/200 | 2.42 | 5.45e-04 | - | no |
| M | 5 | GO:0016301 | kinase activity | 15/200 | 1.86 | 7.21e-03 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 142/200 | 4.87 | 3.24e-74 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 154/200 | 1.86 | 2.37e-25 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 160/200 | 1.53 | 8.52e-17 | - | no |
| PS | 5 | PO:0009046 | flower | 159/200 | 1.53 | 1.57e-16 | - | no |
| PS | 3 | PO:0009031 | sepal | 148/200 | 1.60 | 3.01e-16 | - | no |
| PS | 3 | PO:0009006 | shoot | 160/200 | 1.47 | 6.43e-15 | - | no |
| PS | 3 | PO:0009032 | petal | 139/200 | 1.59 | 5.77e-14 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 141/200 | 1.50 | 6.33e-12 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 141/200 | 1.50 | 6.33e-12 | - | no |
| PS | 3 | PO:0006001 | phyllome | 147/200 | 1.43 | 3.60e-11 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 125/200 | 1.49 | 1.57e-09 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 128/200 | 1.42 | 2.07e-08 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 119/200 | 1.42 | 1.89e-07 | - | no |
| PS | 3 | PO:0009010 | seed | 114/200 | 1.17 | 8.99e-03 | - | no |
| PG | 5 | PO:0007605 | androecium developmental stages | 140/200 | 4.78 | 1.39e-71 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 160/200 | 1.57 | 3.31e-18 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 160/200 | 1.53 | 9.32e-17 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 151/200 | 1.56 | 1.40e-15 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 142/200 | 1.44 | 1.48e-10 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 111/200 | 1.35 | 1.31e-05 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 113/200 | 1.25 | 4.32e-04 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 113/200 | 1.25 | 5.27e-04 | - | no |
| KW | 0 | germinated | - | 121/200 | 21.87 | 2.46e-138 | - | no |
| KW | 0 | pollen | - | 130/200 | 14.57 | 1.36e-126 | - | no |
| KW | 0 | mature | - | 123/200 | 13.75 | 3.40e-115 | - | no |
| KW | 0 | anthesis | - | 132/200 | 10.04 | 2.44e-107 | - | no |
| KW | 0 | globular | - | 92/200 | 24.51 | 2.19e-106 | - | no |
| KW | 0 | stage | - | 141/200 | 7.28 | 2.55e-97 | - | no |
| KW | 0 | petal | - | 123/200 | 8.43 | 6.47e-89 | - | no |
| KW | 0 | expansion | - | 123/200 | 8.37 | 1.59e-88 | - | no |
| KW | 0 | differentiation | - | 124/200 | 8.20 | 2.30e-88 | - | no |
| KW | 0 | pectin | - | 29/200 | 19.13 | 5.54e-30 | - | no |
| KW | 0 | pectinesterase | - | 22/200 | 23.45 | 2.22e-25 | - | no |
| KW | 0 | endomembrane | - | 78/200 | 3.30 | 1.18e-23 | - | no |
| KW | 0 | system | - | 78/200 | 3.22 | 5.64e-23 | - | no |
| KW | 0 | ipr006501 | - | 17/200 | 22.98 | 4.91e-20 | - | no |
| KW | 0 | ipr012334 | - | 18/200 | 18.82 | 2.30e-19 | - | no |
| KW | 0 | ipr011050 | - | 18/200 | 18.47 | 3.31e-19 | - | no |
| KW | 0 | virulence | - | 18/200 | 18.25 | 4.19e-19 | - | no |
| KW | 0 | lyase | - | 18/200 | 9.07 | 1.81e-13 | - | no |
| KW | 0 | sepal | - | 17/200 | 7.87 | 8.13e-12 | - | no |
| KW | 0 | inhibitor | - | 19/200 | 6.36 | 2.86e-11 | - | no |
| KW | 0 | gametophyte | - | 21/200 | 5.35 | 8.52e-11 | - | no |
| KW | 0 | flower | - | 25/200 | 3.27 | 5.49e-08 | - | no |
| KW | 0 | enzyme | - | 16/200 | 4.74 | 6.08e-08 | - | no |
| KW | 0 | lipid | - | 16/200 | 4.66 | 7.82e-08 | - | no |
| KW | 0 | modification | - | 11/200 | 6.46 | 1.69e-07 | - | no |
| KW | 0 | apoplast | - | 10/200 | 5.96 | 1.14e-06 | - | no |
| KW | 0 | myristoylation | - | 12/200 | 4.73 | 1.91e-06 | - | no |
| KW | 0 | terminal | - | 40/200 | 2.08 | 2.70e-06 | - | no |
| KW | 0 | whorl | - | 11/200 | 4.70 | 4.72e-06 | - | no |
| KW | 0 | calcium | - | 11/200 | 4.13 | 1.73e-05 | - | no |
| KW | 0 | active | - | 21/200 | 2.57 | 2.65e-05 | - | no |
| KW | 0 | glycoside | - | 10/200 | 3.80 | 7.66e-05 | - | no |
| KW | 0 | hydrolase | - | 18/200 | 2.47 | 1.45e-04 | - | no |
| KW | 0 | carbohydrate | - | 12/200 | 3.06 | 1.75e-04 | - | no |
| KW | 0 | signaling | - | 11/200 | 2.95 | 4.00e-04 | - | no |
| KW | 0 | phosphorylation | - | 15/200 | 2.44 | 4.91e-04 | - | no |
| KW | 0 | catalytic | - | 21/200 | 2.07 | 5.72e-04 | - | no |
| KW | 0 | factor | - | 31/200 | 1.77 | 6.35e-04 | - | no |
| KW | 0 | ipr008271 | - | 12/200 | 2.46 | 1.35e-03 | - | no |
| KW | 0 | ipr017441 | - | 11/200 | 2.56 | 1.37e-03 | - | no |
| KW | 0 | ipr000719 | - | 14/200 | 2.25 | 1.59e-03 | - | no |
| KW | 0 | sequence | - | 10/200 | 2.63 | 1.65e-03 | - | no |
| KW | 0 | biological_process | - | 78/200 | 1.30 | 2.27e-03 | - | no |
| KW | 0 | ipr011009 | - | 14/200 | 2.17 | 2.27e-03 | - | no |
| KW | 0 | metabolic | - | 21/200 | 1.83 | 2.70e-03 | - | no |
| KW | 0 | member | - | 20/200 | 1.83 | 3.34e-03 | - | no |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | - | no |
| KW | 0 | signal | - | 10/200 | 2.28 | 4.91e-03 | - | no |
| KW | 0 | serine | - | 16/200 | 1.80 | 8.42e-03 | - | no |
| KW | 0 | threonine | - | 14/200 | 1.87 | 8.71e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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