OMAT1P107220http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101072200000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P107210 | 0.939459 | - | AT1G22400 | UGT85A1 | - | - |
| OMAT5P110310 | 0.921641 | - | AT5G42940 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT1P117660 | 0.919999 | - | AT1G69930 | ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) | - | - |
| OMAT5P007750 | 0.912364 | - | - | - | AT5G23050 | AAE17 (ACYL-ACTIVATING ENZYME 17) |
| OMAT4P003455 | 0.907458 | - | - | - | AT4G13250 | short-chain dehydrogenase/reductase (SDR) family protein |
| OMAT3P113580 | 0.905829 | - | AT3G55970 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | - | - |
| OMAT3P113790 | 0.904556 | - | - | - | AT3G56310 | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative |
| OMAT5P020070 | 0.903296 | - | - | - | AT5G65110 | ACX2 (ACYL-COA OXIDASE 2) |
| OMAT3P112030 | 0.902836 | - | - | - | AT3G51730 | saposin B domain-containing protein |
| OMAT3P001350 | 0.900964 | - | AT3G04000 | short-chain dehydrogenase/reductase (SDR) family protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P101200 | -0.76083 | - | AT2G05920 | subtilase family protein | - | - |
| OMAT3P011380 | -0.754585 | - | AT3G43740 | leucine-rich repeat family protein | - | - |
| OMAT4P010820 | -0.738675 | - | AT4G32330 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT1P005660 | -0.730291 | - | AT1G15710 | prephenate dehydrogenase family protein | - | - |
| OMAT1P009440 | -0.72596 | - | AT1G26650 | unknown protein | - | - |
| OMAT3P006420 | -0.720381 | - | AT3G17120 | unknown protein | - | - |
| OMAT1P022620 | -0.7174 | - | AT1G76850 | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) | - | - |
| OMAT5P001210 | -0.703371 | - | AT5G04060 | dehydration-responsive protein-related | - | - |
| OMAT1P016380 | -0.699876 | - | AT1G59970 | matrixin family protein | - | - |
| OMAT3P003120 | -0.697701 | - | AT3G09035 | legume lectin family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 4.14e-21 | :20 terms with high significance | |
| 4.14e-21 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0044248 | cellular catabolic process | 22/200 | 6.10 | 2.31e-12 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 39/200 | 3.42 | 3.09e-12 | - | no |
| B | 4 | GO:0044282 | small molecule catabolic process | 14/200 | 9.46 | 3.08e-11 | - | no |
| B | 3 | GO:0009056 | catabolic process | 22/200 | 4.61 | 5.76e-10 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 26/200 | 3.89 | 8.20e-10 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 20/200 | 4.54 | 4.10e-09 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 20/200 | 4.53 | 4.30e-09 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 20/200 | 4.46 | 5.70e-09 | - | no |
| B | 3 | GO:0006950 | response to stress | 34/200 | 2.74 | 2.48e-08 | - | no |
| B | 4 | GO:0009308 | amine metabolic process | 14/200 | 5.60 | 4.00e-08 | - | no |
| B | 5 | GO:0044106 | cellular amine metabolic process | 13/200 | 5.72 | 8.28e-08 | - | no |
| B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 16/200 | 4.60 | 9.30e-08 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 27/200 | 3.00 | 1.01e-07 | - | no |
| B | 4 | GO:0006979 | response to oxidative stress | 11/200 | 6.72 | 1.10e-07 | - | no |
| B | 5 | GO:0009737 | response to abscisic acid stimulus | 11/200 | 6.51 | 1.56e-07 | - | no |
| B | 5 | GO:0006520 | cellular amino acid metabolic process | 11/200 | 5.23 | 1.60e-06 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 17/200 | 3.30 | 4.89e-06 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 15/200 | 3.17 | 2.45e-05 | - | no |
| B | 4 | GO:0006629 | lipid metabolic process | 14/200 | 3.22 | 3.56e-05 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 37/200 | 1.86 | 6.90e-05 | - | no |
| B | 4 | GO:0044255 | cellular lipid metabolic process | 10/200 | 3.72 | 9.16e-05 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 36/200 | 1.85 | 1.01e-04 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 69/200 | 1.46 | 1.79e-04 | - | no |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 22/200 | 2.09 | 3.77e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 22/200 | 2.03 | 5.43e-04 | - | no |
| B | 5 | GO:0006350 | transcription | 21/200 | 2.06 | 6.04e-04 | 1.02E-15 | no |
| B | 3 | GO:0044238 | primary metabolic process | 69/200 | 1.39 | 7.71e-04 | - | no |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 20/200 | 2.03 | 9.27e-04 | - | no |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 20/200 | 1.99 | 1.18e-03 | - | no |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 20/200 | 1.99 | 1.18e-03 | - | no |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 20/200 | 1.97 | 1.31e-03 | - | no |
| B | 5 | GO:0032774 | RNA biosynthetic process | 13/200 | 2.37 | 1.31e-03 | - | no |
| B | 3 | GO:0065008 | regulation of biological quality | 10/200 | 2.68 | 1.43e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 22/200 | 1.87 | 1.68e-03 | - | no |
| B | 5 | GO:0051252 | regulation of RNA metabolic process | 12/200 | 2.30 | 2.45e-03 | - | no |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 19/200 | 1.90 | 2.66e-03 | - | no |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 20/200 | 1.83 | 3.30e-03 | - | no |
| B | 5 | GO:0010468 | regulation of gene expression | 19/200 | 1.78 | 5.23e-03 | 1.01E-15 | no |
| B | 3 | GO:0050794 | regulation of cellular process | 25/200 | 1.64 | 5.39e-03 | - | no |
| C | 3 | GO:0044424 | intracellular part | 75/200 | 1.47 | 6.18e-05 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 66/200 | 1.50 | 1.12e-04 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 66/200 | 1.50 | 1.12e-04 | - | no |
| C | 3 | GO:0005622 | intracellular | 76/200 | 1.43 | 1.54e-04 | 8.12E-16 | no |
| C | 3 | GO:0043229 | intracellular organelle | 67/200 | 1.45 | 2.85e-04 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 56/200 | 1.50 | 4.85e-04 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 51/200 | 1.47 | 1.37e-03 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 13/200 | 2.03 | 5.27e-03 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 30/200 | 3.56 | 3.93e-10 | - | no |
| M | 3 | GO:0003700 | transcription factor activity | 19/200 | 1.88 | 2.88e-03 | - | no |
| M | 4 | GO:0003677 | DNA binding | 24/200 | 1.73 | 3.06e-03 | - | no |
| M | 4 | GO:0043169 | cation binding | 23/200 | 1.60 | 9.41e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 23/200 | 1.60 | 9.41e-03 | - | no |
| PS | 5 | PO:0009028 | microsporophyll | 162/200 | 1.93 | 1.27e-30 | - | yes |
| PS | 4 | PO:0009047 | stem | 162/200 | 1.92 | 2.89e-30 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 165/200 | 1.83 | 1.03e-28 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 174/200 | 1.70 | 1.05e-27 | - | yes |
| PS | 3 | PO:0009006 | shoot | 178/200 | 1.64 | 2.81e-27 | - | yes |
| PS | 4 | PO:0009025 | leaf | 164/200 | 1.78 | 1.14e-26 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 154/200 | 1.86 | 2.37e-25 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 172/200 | 1.64 | 8.18e-25 | - | yes |
| PS | 5 | PO:0009046 | flower | 171/200 | 1.64 | 1.99e-24 | - | yes |
| PS | 3 | PO:0009031 | sepal | 159/200 | 1.72 | 7.16e-23 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 151/200 | 1.80 | 1.07e-22 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 139/200 | 1.89 | 9.89e-22 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 147/200 | 1.78 | 4.14e-21 | - | yes |
| PS | 3 | PO:0009032 | petal | 151/200 | 1.72 | 1.64e-20 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 156/200 | 1.65 | 7.84e-20 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 156/200 | 1.65 | 7.84e-20 | - | yes |
| PS | 3 | PO:0009005 | root | 151/200 | 1.68 | 3.42e-19 | - | yes |
| PS | 5 | PO:0008037 | seedling | 148/200 | 1.68 | 2.20e-18 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 137/200 | 1.77 | 2.75e-18 | - | yes |
| PS | 4 | PO:0009001 | fruit | 157/200 | 1.60 | 2.92e-18 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 157/200 | 1.60 | 2.92e-18 | - | yes |
| PS | 4 | PO:0009009 | embryo | 154/200 | 1.59 | 2.08e-17 | - | yes |
| PS | 3 | PO:0009010 | seed | 155/200 | 1.58 | 2.32e-17 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 144/200 | 1.67 | 2.46e-17 | - | yes |
| PS | 3 | PO:0009013 | meristem | 137/200 | 1.71 | 1.36e-16 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 134/200 | 1.72 | 1.97e-16 | - | no |
| PS | 5 | PO:0020038 | petiole | 130/200 | 1.71 | 3.21e-15 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 73/200 | 2.51 | 3.27e-15 | - | no |
| PS | 5 | PO:0009052 | pedicel | 133/200 | 1.64 | 4.23e-14 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 54/200 | 1.66 | 3.70e-05 | - | yes |
| PS | 3 | PO:0020097 | generative cell | 54/200 | 1.66 | 3.70e-05 | - | yes |
| PS | 5 | PO:0000349 | epidermal initial | 24/200 | 2.13 | 1.65e-04 | - | no |
| PS | 4 | PO:0004011 | initial cell | 24/200 | 2.11 | 1.82e-04 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 24/200 | 2.11 | 1.86e-04 | - | no |
| PS | 4 | PO:0005679 | epidermis | 25/200 | 2.02 | 2.83e-04 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 25/200 | 2.02 | 2.85e-04 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 23/200 | 2.07 | 3.32e-04 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 23/200 | 2.05 | 3.67e-04 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 24/200 | 2.01 | 3.82e-04 | - | no |
| PS | 4 | PO:0000293 | guard cell | 22/200 | 2.04 | 5.07e-04 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 22/200 | 2.04 | 5.39e-04 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 22/200 | 2.03 | 5.51e-04 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 166/200 | 1.71 | 5.44e-25 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 154/200 | 1.82 | 3.32e-24 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 170/200 | 1.62 | 2.86e-23 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 152/200 | 1.81 | 3.00e-23 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 152/200 | 1.81 | 3.08e-23 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 163/200 | 1.65 | 7.60e-22 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 165/200 | 1.62 | 2.14e-21 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 138/200 | 1.79 | 4.86e-19 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 138/200 | 1.79 | 5.14e-19 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 142/200 | 1.73 | 2.18e-18 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 149/200 | 1.65 | 5.37e-18 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 78/200 | 2.66 | 6.30e-18 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 149/200 | 1.65 | 8.66e-18 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 129/200 | 1.62 | 4.55e-13 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 132/200 | 1.59 | 7.68e-13 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 131/200 | 1.59 | 1.12e-12 | - | no |
| KW | 0 | dehydrogenase | - | 21/200 | 7.24 | 2.28e-13 | - | no |
| KW | 0 | process | - | 53/200 | 2.59 | 1.77e-11 | 9.34E-16 | yes |
| KW | 0 | oxidoreductase | - | 22/200 | 4.72 | 3.70e-10 | - | no |
| KW | 0 | response | - | 43/200 | 2.40 | 1.88e-08 | 3.49E-15 | no |
| KW | 0 | abscisic | - | 11/200 | 7.85 | 2.02e-08 | - | no |
| KW | 0 | stress | - | 19/200 | 4.05 | 6.19e-08 | - | no |
| KW | 0 | metabolic | - | 31/200 | 2.70 | 1.45e-07 | - | yes |
| KW | 0 | encodes | - | 50/200 | 1.96 | 7.73e-07 | 1.59E-16 | no |
| KW | 0 | transferring | - | 14/200 | 4.20 | 1.52e-06 | 0 | yes |
| KW | 0 | ipr016040 | - | 11/200 | 5.11 | 2.02e-06 | - | no |
| KW | 0 | stimulus | - | 15/200 | 3.48 | 7.82e-06 | - | no |
| KW | 0 | chain | - | 12/200 | 3.97 | 1.26e-05 | - | no |
| KW | 0 | induced | - | 11/200 | 4.02 | 2.25e-05 | - | no |
| KW | 0 | catalytic | - | 24/200 | 2.36 | 3.18e-05 | 2.44E-16 | no |
| KW | 0 | catabolic | - | 12/200 | 3.60 | 3.45e-05 | - | no |
| KW | 0 | region | - | 30/200 | 2.08 | 4.63e-05 | - | no |
| KW | 0 | terminal | - | 36/200 | 1.87 | 8.37e-05 | - | no |
| KW | 0 | reductase | - | 10/200 | 3.67 | 1.03e-04 | - | no |
| KW | 0 | transferase | - | 16/200 | 2.61 | 1.59e-04 | 0 | yes |
| KW | 0 | processes | - | 10/200 | 3.30 | 2.59e-04 | - | no |
| KW | 0 | glycosyl | - | 12/200 | 2.81 | 3.91e-04 | 0 | yes |
| KW | 0 | groups | - | 10/200 | 3.06 | 4.84e-04 | 0 | yes |
| KW | 0 | leaves | - | 13/200 | 2.63 | 4.95e-04 | - | no |
| KW | 0 | enzyme | - | 10/200 | 2.96 | 6.33e-04 | 2.22E-15 | no |
| KW | 0 | dependent | - | 25/200 | 1.87 | 9.12e-04 | - | no |
| KW | 0 | mediated | - | 10/200 | 2.83 | 9.28e-04 | - | no |
| KW | 0 | class | - | 14/200 | 2.34 | 1.08e-03 | - | no |
| KW | 0 | group | - | 13/200 | 2.42 | 1.11e-03 | 3.04E-15 | no |
| KW | 0 | transcription | - | 26/200 | 1.79 | 1.37e-03 | 1.02E-15 | yes |
| KW | 0 | synthase | - | 11/200 | 2.51 | 1.65e-03 | - | no |
| KW | 0 | mitochondrion | - | 12/200 | 2.19 | 3.68e-03 | - | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | - | no |
| KW | 0 | factor | - | 28/200 | 1.60 | 4.90e-03 | - | yes |
| KW | 0 | hydrolase | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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