OMAT1P112890http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u101128900000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P105030 | 0.91616 | - | AT4G19670 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT4P108060 | 0.907574 | - | AT4G28770 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT3P105360 | 0.874485 | - | AT3G15940 | glycosyl transferase family 1 protein | - | - |
| OMAT1P121320 | 0.864491 | - | AT1G80360 | aminotransferase class I and II family protein | - | - |
| OMAT5P019840 | 0.849598 | - | AT5G64440 | AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase) | - | - |
| OMAT5P103750 | 0.849406 | - | AT5G13550 | SULTR4 | - | - |
| OMAT2P112320 | 0.847988 | - | AT2G47270 | transcription factor/ transcription regulator | - | - |
| OMAT5P112260 | 0.840158 | - | AT5G48230 | ACAT2 (ACETOACETYL-COA THIOLASE 2) | - | - |
| OMAT5P019435 | 0.838835 | - | AT5G63500 | unknown protein | - | - |
| OMAT3P111290 | 0.837921 | - | AT3G49060 | protein kinase family protein / U-box domain-containing protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P019290 | -0.836689 | - | AT5G63050 | EMB2759 (embryo defective 2759) | - | - |
| OMAT1P004460 | -0.826904 | - | AT1G12770 | EMB1586 (embryo defective 1586) | - | - |
| OMAT1P112070 | -0.817394 | - | AT1G49650 | cell death associated protein-related | - | - |
| OMAT1P101110 | -0.808818 | - | AT1G04530 | binding | - | - |
| OMAT2P010050 | -0.789334 | - | AT2G38450 | INVOLVED IN: biological_process unknown | - | - |
| OMAT5P013710 | -0.768465 | - | AT5G48220 | indole-3-glycerol phosphate synthase, putative | - | - |
| OMAT2P100870 | -0.749557 | - | AT2G04040 | TX1 | - | - |
| OMAT1P100080 | -0.744532 | - | AT1G01170 | ozone-responsive stress-related protein, putative | - | - |
| OMAT1P000490 | -0.743674 | - | AT1G02150,AT1G02160 | [AT1G02150]pentatricopeptide (PPR) repeat-containing protein, [AT1G02160]FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P113480 | -0.739698 | - | AT5G52190,AT5G52200 | [AT5G52190]sugar isomerase (SIS) domain-containing protein, [AT5G52200]unknown protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.40e-30 | :20 terms with high significance | |
| 2.40e-30 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0006810 | transport | 26/200 | 2.54 | 4.32e-06 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 26/200 | 2.53 | 4.56e-06 | - | no |
| B | 3 | GO:0033036 | macromolecule localization | 13/200 | 3.76 | 1.14e-05 | - | no |
| B | 4 | GO:0008104 | protein localization | 10/200 | 4.32 | 2.40e-05 | - | no |
| B | 3 | GO:0051641 | cellular localization | 11/200 | 3.74 | 4.52e-05 | - | no |
| B | 3 | GO:0051649 | establishment of localization in cell | 10/200 | 3.71 | 9.34e-05 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 17/200 | 2.56 | 1.33e-04 | - | yes |
| B | 4 | GO:0006793 | phosphorus metabolic process | 17/200 | 2.56 | 1.35e-04 | - | yes |
| B | 3 | GO:0044281 | small molecule metabolic process | 20/200 | 2.23 | 2.82e-04 | - | no |
| B | 3 | GO:0009056 | catabolic process | 13/200 | 2.73 | 3.43e-04 | - | no |
| B | 3 | GO:0051707 | response to other organism | 10/200 | 2.99 | 5.97e-04 | - | no |
| B | 4 | GO:0044248 | cellular catabolic process | 10/200 | 2.77 | 1.09e-03 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 10/200 | 2.77 | 1.11e-03 | - | no |
| B | 5 | GO:0006508 | proteolysis | 11/200 | 2.62 | 1.12e-03 | - | no |
| B | 3 | GO:0006950 | response to stress | 23/200 | 1.85 | 1.51e-03 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 12/200 | 2.30 | 2.38e-03 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 38/200 | 3.07 | 1.51e-10 | 3.64E-21 | yes |
| C | 3 | GO:0016020 | membrane | 61/200 | 2.23 | 2.06e-10 | 3.64E-21 | yes |
| C | 3 | GO:0044464 | cell part | 126/200 | 1.38 | 3.10e-07 | - | yes |
| C | 5 | GO:0005773 | vacuole | 13/200 | 3.77 | 1.12e-05 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 55/200 | 1.47 | 8.61e-04 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 51/200 | 1.47 | 1.37e-03 | - | no |
| C | 3 | GO:0005622 | intracellular | 71/200 | 1.33 | 2.15e-03 | - | no |
| C | 3 | GO:0044424 | intracellular part | 66/200 | 1.30 | 6.79e-03 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 18/200 | 2.90 | 1.69e-05 | - | yes |
| M | 5 | GO:0016301 | kinase activity | 19/200 | 2.36 | 1.79e-04 | - | yes |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 14/200 | 2.71 | 2.37e-04 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 20/200 | 2.18 | 3.70e-04 | - | yes |
| M | 3 | GO:0016740 | transferase activity | 28/200 | 1.71 | 1.84e-03 | - | yes |
| M | 3 | GO:0005515 | protein binding | 27/200 | 1.73 | 1.95e-03 | 2.00E-51 | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 12/200 | 2.14 | 4.49e-03 | - | no |
| M | 5 | GO:0046872 | metal ion binding | 23/200 | 1.69 | 4.78e-03 | - | no |
| M | 4 | GO:0043169 | cation binding | 24/200 | 1.67 | 4.89e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 24/200 | 1.67 | 4.89e-03 | 2.00E-51 | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 10/200 | 2.27 | 5.06e-03 | - | no |
| PS | 3 | PO:0009013 | meristem | 166/200 | 2.07 | 1.36e-36 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 168/200 | 2.00 | 1.53e-35 | - | yes |
| PS | 5 | PO:0008037 | seedling | 171/200 | 1.94 | 6.07e-35 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 166/200 | 2.00 | 1.37e-34 | - | yes |
| PS | 3 | PO:0009005 | root | 172/200 | 1.91 | 1.45e-34 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 172/200 | 1.91 | 1.49e-34 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 157/200 | 2.14 | 1.75e-34 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 161/200 | 2.07 | 2.09e-34 | - | yes |
| PS | 4 | PO:0009047 | stem | 167/200 | 1.98 | 2.29e-34 | - | yes |
| PS | 5 | PO:0020038 | petiole | 159/200 | 2.09 | 5.53e-34 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 165/200 | 1.97 | 4.72e-33 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 162/200 | 1.97 | 1.18e-31 | - | yes |
| PS | 4 | PO:0009025 | leaf | 170/200 | 1.85 | 2.01e-31 | - | yes |
| PS | 3 | PO:0009031 | sepal | 169/200 | 1.83 | 2.64e-30 | - | yes |
| PS | 4 | PO:0009009 | embryo | 172/200 | 1.78 | 6.51e-30 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 170/200 | 1.80 | 8.15e-30 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 170/200 | 1.80 | 8.15e-30 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 176/200 | 1.72 | 2.16e-29 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 158/200 | 1.94 | 2.41e-29 | - | yes |
| PS | 3 | PO:0009010 | seed | 172/200 | 1.76 | 4.14e-29 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 162/200 | 1.88 | 4.32e-29 | - | yes |
| PS | 4 | PO:0009001 | fruit | 172/200 | 1.75 | 8.96e-29 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 172/200 | 1.75 | 8.96e-29 | - | yes |
| PS | 3 | PO:0009032 | petal | 163/200 | 1.86 | 9.14e-29 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 153/200 | 1.98 | 1.64e-28 | - | yes |
| PS | 3 | PO:0009006 | shoot | 177/200 | 1.63 | 1.96e-26 | - | yes |
| PS | 5 | PO:0009046 | flower | 173/200 | 1.66 | 5.68e-26 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 173/200 | 1.65 | 1.37e-25 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 78/200 | 2.68 | 4.64e-18 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 62/200 | 1.91 | 6.20e-08 | - | no |
| PS | 3 | PO:0020097 | generative cell | 62/200 | 1.91 | 6.20e-08 | - | no |
| PS | 4 | PO:0000293 | guard cell | 24/200 | 2.23 | 7.93e-05 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 24/200 | 2.22 | 8.51e-05 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 24/200 | 2.22 | 8.73e-05 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 24/200 | 2.16 | 1.33e-04 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 24/200 | 2.14 | 1.48e-04 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 25/200 | 2.10 | 1.58e-04 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 24/200 | 2.13 | 1.65e-04 | - | no |
| PS | 4 | PO:0004011 | initial cell | 24/200 | 2.11 | 1.82e-04 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 24/200 | 2.11 | 1.86e-04 | - | no |
| PS | 4 | PO:0005679 | epidermis | 25/200 | 2.02 | 2.83e-04 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 25/200 | 2.02 | 2.85e-04 | - | no |
| PG | 5 | PO:0007133 | leaf production | 165/200 | 1.96 | 7.40e-33 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 165/200 | 1.96 | 7.63e-33 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 165/200 | 1.95 | 2.02e-32 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 156/200 | 2.03 | 5.27e-31 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 156/200 | 2.03 | 5.66e-31 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 158/200 | 1.99 | 1.31e-30 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 160/200 | 1.95 | 2.40e-30 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 172/200 | 1.77 | 1.11e-29 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 166/200 | 1.84 | 3.36e-29 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 175/200 | 1.72 | 5.71e-29 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 159/200 | 1.92 | 6.52e-29 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 165/200 | 1.83 | 1.11e-28 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 158/200 | 1.92 | 1.34e-28 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 176/200 | 1.68 | 5.53e-28 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 171/200 | 1.73 | 1.02e-27 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 72/200 | 2.46 | 1.49e-14 | - | no |
| KW | 0 | plasma | - | 38/200 | 3.32 | 1.52e-11 | 3.64E-21 | yes |
| KW | 0 | membrane | - | 60/200 | 2.25 | 1.88e-10 | 3.64E-21 | yes |
| KW | 0 | transport | - | 27/200 | 2.77 | 5.07e-07 | - | no |
| KW | 0 | vacuole | - | 14/200 | 4.44 | 7.64e-07 | - | no |
| KW | 0 | transporter | - | 19/200 | 2.73 | 2.45e-05 | - | no |
| KW | 0 | active | - | 21/200 | 2.57 | 2.65e-05 | - | yes |
| KW | 0 | mediated | - | 12/200 | 3.39 | 6.31e-05 | - | no |
| KW | 0 | ipr017441 | - | 13/200 | 3.03 | 1.18e-04 | - | yes |
| KW | 0 | ipr008271 | - | 14/200 | 2.87 | 1.29e-04 | - | no |
| KW | 0 | transmembrane | - | 17/200 | 2.34 | 3.91e-04 | 5.00E-47 | no |
| KW | 0 | ipr000719 | - | 15/200 | 2.41 | 5.69e-04 | - | yes |
| KW | 0 | threonine | - | 17/200 | 2.27 | 5.72e-04 | 8.00E-57 | no |
| KW | 0 | terminal | - | 33/200 | 1.71 | 7.91e-04 | - | no |
| KW | 0 | ipr011009 | - | 15/200 | 2.32 | 8.41e-04 | - | yes |
| KW | 0 | kinase | - | 21/200 | 1.99 | 9.37e-04 | 0 | yes |
| KW | 0 | putative | - | 37/200 | 1.60 | 1.37e-03 | 0 | yes |
| KW | 0 | phosphorylation | - | 14/200 | 2.28 | 1.40e-03 | - | yes |
| KW | 0 | serine | - | 18/200 | 2.02 | 1.63e-03 | 8.00E-57 | no |
| KW | 0 | intracellular | - | 12/200 | 2.33 | 2.19e-03 | - | no |
| KW | 0 | peptidase | - | 10/200 | 2.51 | 2.36e-03 | - | no |
| KW | 0 | ipr017442 | - | 12/200 | 2.28 | 2.62e-03 | - | no |
| KW | 0 | stress | - | 11/200 | 2.34 | 2.84e-03 | - | no |
| KW | 0 | dependent | - | 23/200 | 1.72 | 4.06e-03 | 2.00E-60 | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | - | no |
| KW | 0 | response | - | 28/200 | 1.56 | 6.81e-03 | - | no |
| KW | 0 | process | - | 31/200 | 1.51 | 7.38e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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