OMAT2P111960http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u201119600000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P102510 | 0.864176 | - | AT4G12320 | CYP706A6 | - | - |
| OMAT5P101220 | 0.853145 | - | AT5G04950 | NAS1 (NICOTIANAMINE SYNTHASE 1) | - | - |
| OMAT1P012780 | 0.8482 | - | AT1G45201 | TLL1 (TRIACYLGLYCEROL LIPASE-LIKE 1) | - | - |
| OMAT1P012800 | 0.820022 | - | AT1G45201 | TLL1 (TRIACYLGLYCEROL LIPASE-LIKE 1) | - | - |
| OMAT3P111150 | 0.820005 | - | AT3G48610 | phosphoesterase family protein | - | - |
| OMAT3P112290 | 0.819843 | - | - | - | AT3G52430 | PAD4 (PHYTOALEXIN DEFICIENT 4) |
| OMAT1P120610 | 0.818268 | - | AT1G78510 | SPS1 (solanesyl diphosphate synthase 1) | - | - |
| OMAT2P101710 | 0.813645 | - | AT2G15020 | unknown protein | - | - |
| OMAT5P105280 | 0.811694 | - | - | - | AT5G18030 | auxin-responsive protein, putative |
| OMAT3P100040 | 0.808188 | - | AT3G01120 | MTO1 (METHIONINE OVERACCUMULATION 1) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P015110 | -0.716203 | - | AT5G52210 | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) | - | - |
| OMAT3P013350 | -0.688815 | - | AT3G50360 | ATCEN2 (CENTRIN2) | - | - |
| OMAT5P006590 | -0.672978 | - | AT5G19000 | ATBPM1 (BTB-POZ and MATH domain 1) | - | - |
| OMAT5P015570 | -0.639231 | - | AT5G53310 | myosin heavy chain-related | - | - |
| OMAT5P108120 | -0.621868 | - | AT5G27520 | PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) | - | - |
| OMAT3P101000 | -0.601887 | - | AT3G03330 | short-chain dehydrogenase/reductase (SDR) family protein | - | - |
| OMAT3P101140 | -0.593797 | - | AT3G03740 | ATBPM4 (BTB-POZ and MATH domain 4) | - | - |
| OMAT5P006120 | -0.589363 | - | AT5G17610 | unknown protein | - | - |
| OMAT2P012610 | -0.573964 | - | AT2G45140 | PVA12 (PLANT VAP HOMOLOG 12) | - | - |
| OMAT3P111710 | -0.573527 | - | AT3G50650 | scarecrow-like transcription factor 7 (SCL7) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.21e-30 | :20 terms with high significance | |
| 1.21e-30 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 5 | GO:0051188 | cofactor biosynthetic process | 10/200 | 10.66 | 3.07e-09 | - | no |
| B | 4 | GO:0051186 | cofactor metabolic process | 12/200 | 8.08 | 3.95e-09 | - | no |
| B | 5 | GO:0044271 | cellular nitrogen compound biosynthetic process | 14/200 | 5.29 | 8.30e-08 | - | no |
| B | 5 | GO:0044106 | cellular amine metabolic process | 12/200 | 5.28 | 5.62e-07 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 17/200 | 3.79 | 7.02e-07 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 25/200 | 2.78 | 1.22e-06 | - | no |
| B | 4 | GO:0009308 | amine metabolic process | 12/200 | 4.80 | 1.63e-06 | - | no |
| B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 14/200 | 4.03 | 2.55e-06 | - | no |
| B | 5 | GO:0006520 | cellular amino acid metabolic process | 10/200 | 4.75 | 9.93e-06 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 14/200 | 3.18 | 4.10e-05 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 14/200 | 3.17 | 4.22e-05 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 12/200 | 3.32 | 7.86e-05 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 70/200 | 1.48 | 9.86e-05 | - | no |
| B | 3 | GO:0051707 | response to other organism | 11/200 | 3.28 | 1.54e-04 | 4.24E-18 | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 10/200 | 3.23 | 3.06e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | yes |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 12/200 | 2.64 | 7.02e-04 | - | no |
| B | 3 | GO:0006950 | response to stress | 22/200 | 1.77 | 3.23e-03 | 2.13E-16 | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 11/200 | 2.11 | 6.45e-03 | - | no |
| C | 5 | GO:0009536 | plastid | 88/200 | 4.76 | 2.26e-39 | 1.37E-25 | no |
| C | 4 | GO:0044435 | plastid part | 53/200 | 9.32 | 4.29e-37 | 3.85E-19 | no |
| C | 5 | GO:0044434 | chloroplast part | 52/200 | 9.39 | 1.48e-36 | 1.25E-18 | no |
| C | 4 | GO:0044444 | cytoplasmic part | 98/200 | 2.82 | 1.68e-25 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 100/200 | 2.67 | 3.04e-24 | 2.55E-16 | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 106/200 | 2.41 | 1.84e-22 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 106/200 | 2.41 | 1.86e-22 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 106/200 | 2.30 | 1.05e-20 | - | yes |
| C | 4 | GO:0009579 | thylakoid | 25/200 | 10.04 | 5.72e-19 | - | no |
| C | 5 | GO:0042651 | thylakoid membrane | 22/200 | 12.15 | 8.99e-19 | - | no |
| C | 4 | GO:0044436 | thylakoid part | 23/200 | 11.15 | 1.17e-18 | - | no |
| C | 4 | GO:0034357 | photosynthetic membrane | 22/200 | 11.99 | 1.21e-18 | 5.46E-18 | no |
| C | 3 | GO:0044446 | intracellular organelle part | 54/200 | 3.77 | 1.54e-18 | - | no |
| C | 3 | GO:0044422 | organelle part | 54/200 | 3.76 | 1.60e-18 | 1.23E-18 | no |
| C | 3 | GO:0044424 | intracellular part | 108/200 | 2.12 | 1.94e-18 | 4.23E-17 | yes |
| C | 5 | GO:0055035 | plastid thylakoid membrane | 21/200 | 12.12 | 5.34e-18 | - | no |
| C | 3 | GO:0005622 | intracellular | 109/200 | 2.05 | 1.70e-17 | 8.12E-16 | yes |
| C | 5 | GO:0009526 | plastid envelope | 24/200 | 8.73 | 7.30e-17 | - | no |
| C | 5 | GO:0031976 | plastid thylakoid | 21/200 | 10.55 | 1.02e-16 | - | no |
| C | 4 | GO:0031984 | organelle subcompartment | 21/200 | 10.49 | 1.16e-16 | - | no |
| C | 3 | GO:0044464 | cell part | 145/200 | 1.58 | 4.15e-15 | 2.16E-18 | yes |
| C | 5 | GO:0009532 | plastid stroma | 20/200 | 8.09 | 9.41e-14 | 2.87E-19 | no |
| C | 4 | GO:0031967 | organelle envelope | 25/200 | 6.00 | 1.25e-13 | - | no |
| C | 3 | GO:0031975 | envelope | 25/200 | 6.00 | 1.25e-13 | 1.04E-16 | no |
| C | 3 | GO:0048046 | apoplast | 13/200 | 6.59 | 1.42e-08 | 5.62E-12 | no |
| C | 3 | GO:0016020 | membrane | 53/200 | 1.94 | 4.91e-07 | 1.96E-15 | yes |
| M | 3 | GO:0016491 | oxidoreductase activity | 25/200 | 2.96 | 3.71e-07 | - | no |
| M | 3 | GO:0016740 | transferase activity | 26/200 | 1.59 | 6.91e-03 | 7.54E-17 | no |
| PS | 4 | PO:0020030 | cotyledon | 168/200 | 2.29 | 2.71e-44 | 2.78E-36 | yes |
| PS | 5 | PO:0020039 | leaf lamina | 173/200 | 2.10 | 2.11e-41 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 167/200 | 2.16 | 5.10e-40 | - | yes |
| PS | 3 | PO:0009013 | meristem | 167/200 | 2.08 | 1.77e-37 | 5.93E-18 | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 164/200 | 2.11 | 5.84e-37 | 5.62E-12 | yes |
| PS | 4 | PO:0009025 | leaf | 176/200 | 1.91 | 8.41e-37 | 1.37E-25 | yes |
| PS | 4 | PO:0009047 | stem | 169/200 | 2.00 | 4.08e-36 | 4.88E-17 | yes |
| PS | 5 | PO:0008037 | seedling | 172/200 | 1.95 | 7.64e-36 | 9.38E-80 | yes |
| PS | 5 | PO:0020038 | petiole | 160/200 | 2.10 | 8.30e-35 | 1.37E-25 | yes |
| PS | 5 | PO:0008034 | leaf whorl | 171/200 | 1.81 | 1.21e-30 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 171/200 | 1.81 | 1.21e-30 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 177/200 | 1.73 | 2.90e-30 | - | yes |
| PS | 4 | PO:0009009 | embryo | 172/200 | 1.78 | 6.51e-30 | 9.38E-80 | yes |
| PS | 4 | PO:0000037 | shoot apex | 163/200 | 1.89 | 7.25e-30 | 8.00E-19 | yes |
| PS | 3 | PO:0009010 | seed | 172/200 | 1.76 | 4.14e-29 | 1.37E-25 | yes |
| PS | 4 | PO:0009001 | fruit | 172/200 | 1.75 | 8.96e-29 | 5.45E-17 | yes |
| PS | 3 | PO:0006342 | infructescence | 172/200 | 1.75 | 8.96e-29 | - | yes |
| PS | 3 | PO:0009006 | shoot | 178/200 | 1.64 | 2.81e-27 | 7.97E-24 | yes |
| PS | 4 | PO:0009049 | inflorescence | 175/200 | 1.67 | 3.37e-27 | 1.37E-25 | yes |
| PS | 5 | PO:0009028 | microsporophyll | 157/200 | 1.87 | 7.42e-27 | - | yes |
| PS | 5 | PO:0009046 | flower | 174/200 | 1.67 | 9.00e-27 | 1.37E-25 | yes |
| PS | 4 | PO:0009026 | sporophyll | 162/200 | 1.80 | 1.90e-26 | - | yes |
| PS | 3 | PO:0009031 | sepal | 164/200 | 1.78 | 2.11e-26 | - | yes |
| PS | 3 | PO:0009032 | petal | 159/200 | 1.81 | 8.37e-26 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 146/200 | 1.74 | 1.29e-19 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 134/200 | 1.65 | 1.39e-14 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 130/200 | 1.57 | 5.51e-12 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 33/200 | 3.07 | 2.50e-09 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 33/200 | 3.05 | 2.80e-09 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 33/200 | 3.05 | 2.92e-09 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 33/200 | 2.97 | 5.71e-09 | 1.19E-18 | no |
| PS | 5 | PO:0006035 | shoot epidermis | 33/200 | 2.95 | 6.80e-09 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 33/200 | 2.93 | 8.08e-09 | - | no |
| PS | 4 | PO:0004011 | initial cell | 33/200 | 2.91 | 9.46e-09 | 2.07E-16 | no |
| PS | 3 | PO:0004010 | meristematic cell | 33/200 | 2.90 | 9.84e-09 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 33/200 | 2.77 | 3.18e-08 | 1.60E-16 | no |
| PS | 4 | PO:0005679 | epidermis | 33/200 | 2.66 | 7.84e-08 | 7.47E-17 | no |
| PS | 3 | PO:0009014 | dermal tissue | 33/200 | 2.66 | 7.93e-08 | - | no |
| PS | 3 | PO:0009005 | root | 115/200 | 1.28 | 1.44e-04 | 4.55E-27 | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 170/200 | 2.21 | 3.74e-43 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 170/200 | 2.21 | 4.07e-43 | 7.56E-19 | yes |
| PG | 5 | PO:0007133 | leaf production | 174/200 | 2.07 | 5.46e-41 | 4.07E-18 | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 174/200 | 2.07 | 5.64e-41 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 174/200 | 2.05 | 1.66e-40 | 6.27E-18 | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 173/200 | 1.75 | 2.35e-29 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 174/200 | 1.71 | 3.94e-28 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 175/200 | 1.67 | 3.77e-27 | 4.87E-19 | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 166/200 | 1.71 | 5.44e-25 | 1.03E-18 | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 145/200 | 1.76 | 6.16e-20 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 152/200 | 1.69 | 9.40e-20 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 152/200 | 1.68 | 1.55e-19 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 144/200 | 1.73 | 5.40e-19 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 140/200 | 1.76 | 1.15e-18 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 137/200 | 1.67 | 1.05e-15 | 7.78E-19 | yes |
| KW | 0 | chloroplast | - | 85/200 | 4.81 | 3.70e-38 | 3.96E-27 | no |
| KW | 0 | thylakoid | - | 24/200 | 11.27 | 1.71e-19 | - | no |
| KW | 0 | response | - | 46/200 | 2.56 | 6.43e-10 | 1.37E-25 | no |
| KW | 0 | stroma | - | 14/200 | 7.51 | 7.74e-10 | 6.46E-17 | no |
| KW | 0 | envelope | - | 15/200 | 6.56 | 1.55e-09 | 1.04E-16 | no |
| KW | 0 | process | - | 46/200 | 2.25 | 4.30e-08 | 1.16E-19 | no |
| KW | 0 | biosynthetic | - | 24/200 | 3.36 | 6.00e-08 | 8.21E-20 | no |
| KW | 0 | plastid | - | 10/200 | 6.62 | 4.03e-07 | 1.37E-25 | no |
| KW | 0 | components | - | 10/200 | 6.16 | 8.27e-07 | 1.37E-25 | no |
| KW | 0 | encodes | - | 49/200 | 1.92 | 1.84e-06 | 1.37E-25 | yes |
| KW | 0 | light | - | 12/200 | 4.49 | 3.33e-06 | 9.38E-80 | yes |
| KW | 0 | electron | - | 14/200 | 3.93 | 3.41e-06 | 7.99E-16 | no |
| KW | 0 | membrane | - | 49/200 | 1.84 | 6.08e-06 | 1.96E-15 | no |
| KW | 0 | synthase | - | 15/200 | 3.42 | 9.94e-06 | 3.53E-16 | no |
| KW | 0 | class | - | 18/200 | 3.00 | 1.04e-05 | 5.06E-16 | no |
| KW | 0 | phosphate | - | 11/200 | 3.63 | 6.03e-05 | 5.94E-16 | no |
| KW | 0 | oxidoreductase | - | 14/200 | 3.00 | 7.76e-05 | 3.08E-17 | no |
| KW | 0 | region | - | 28/200 | 1.94 | 2.61e-04 | 3.33E-25 | yes |
| KW | 0 | stress | - | 13/200 | 2.77 | 2.91e-04 | 7.86E-16 | no |
| KW | 0 | putative | - | 39/200 | 1.69 | 3.64e-04 | 1.75E-25 | yes |
| KW | 0 | conserved | - | 26/200 | 1.92 | 4.79e-04 | 2.04E-26 | no |
| KW | 0 | enzyme | - | 10/200 | 2.96 | 6.33e-04 | 2.22E-15 | no |
| KW | 0 | carrier | - | 11/200 | 2.74 | 7.70e-04 | 2.99E-77 | no |
| KW | 0 | alpha | - | 16/200 | 2.19 | 1.12e-03 | 2.00E-15 | no |
| KW | 0 | metabolic | - | 22/200 | 1.92 | 1.22e-03 | 7.47E-16 | no |
| KW | 0 | stimulus | - | 11/200 | 2.55 | 1.41e-03 | 1.58E-16 | no |
| KW | 0 | transport | - | 19/200 | 1.95 | 1.89e-03 | 1.53E-19 | no |
| KW | 0 | terminal | - | 30/200 | 1.56 | 5.56e-03 | 1.37E-25 | yes |
| KW | 0 | transferase | - | 12/200 | 1.96 | 9.10e-03 | 1.82E-16 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
