OMAT3P004110http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u300041100000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P010580 | 0.920155 | - | AT3G28180 | ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4) | - | - |
| OMAT5P006380 | 0.894283 | - | AT5G18500 | protein kinase family protein | - | - |
| OMAT1P020830 | 0.877023 | - | AT1G72180 | leucine-rich repeat transmembrane protein kinase, putative | - | - |
| OMAT4P110460 | 0.875925 | - | AT4G35320 | unknown protein | - | - |
| OMAT3P001900 | 0.87154 | - | AT3G05490 | RALFL22 (ralf-like 22) | - | - |
| OMAT3P010590 | 0.867999 | - | AT3G28200 | peroxidase, putative | - | - |
| OMAT1P010990 | 0.862956 | - | AT1G31300 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT3P102330 | 0.860522 | - | AT3G06750 | hydroxyproline-rich glycoprotein family protein | - | - |
| OMAT5P012260 | 0.855181 | - | AT5G44130 | FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) | - | - |
| OMAT4P111340 | 0.854952 | - | AT4G37450 | AGP18 (ARABINOGALACTAN PROTEIN 18) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P022050 | -0.853453 | - | AT1G75400 | protein binding / zinc ion binding | - | - |
| OMAT3P102395 | -0.764494 | - | AT3G06940 | transposable element gene | - | - |
| OMAT4P000410 | -0.761779 | - | AT4G01280 | myb family transcription factor | - | - |
| OMAT3P108380 | -0.755854 | - | AT3G25800 | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) | - | - |
| OMAT5P020960 | -0.752467 | - | AT5G67330 | ATNRAMP4 | - | - |
| OMAT4P009710 | -0.75044 | - | AT4G29490 | aminopeptidase/ manganese ion binding | - | - |
| OMAT4P010330 | -0.747816 | - | AT4G31160 | DCAF1 (DDB1-CUL4 ASSOCIATED FACTOR 1) | - | - |
| OMAT2P107430 | -0.747338 | - | AT2G33835 | FES1 | - | - |
| OMAT4P105380 | -0.744263 | - | AT4G21350 | PUB8 (PLANT U-BOX 8) | - | - |
| OMAT5P007460 | -0.742272 | - | AT5G22000 | RHF2A (RING-H2 GROUP F2A) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.22e-43 | :20 terms with high significance | |
| 3.22e-43 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0065008 | regulation of biological quality | 21/200 | 5.62 | 3.27e-11 | - | no |
| B | 3 | GO:0016049 | cell growth | 14/200 | 8.75 | 9.26e-11 | - | no |
| B | 5 | GO:0032535 | regulation of cellular component size | 14/200 | 8.43 | 1.55e-10 | - | no |
| B | 4 | GO:0090066 | regulation of anatomical structure size | 14/200 | 8.43 | 1.55e-10 | - | no |
| B | 4 | GO:0016051 | carbohydrate biosynthetic process | 12/200 | 7.18 | 1.62e-08 | - | no |
| B | 3 | GO:0048589 | developmental growth | 10/200 | 6.84 | 2.92e-07 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 19/200 | 3.65 | 3.28e-07 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 12/200 | 4.32 | 5.11e-06 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 12/200 | 4.17 | 7.36e-06 | - | no |
| B | 4 | GO:0009314 | response to radiation | 12/200 | 4.04 | 1.04e-05 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 19/200 | 2.84 | 1.41e-05 | - | yes |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 11/200 | 3.27 | 1.59e-04 | - | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 24/200 | 2.10 | 1.95e-04 | - | yes |
| B | 4 | GO:0006629 | lipid metabolic process | 12/200 | 2.76 | 4.70e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 17/200 | 2.29 | 4.97e-04 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 17/200 | 1.90 | 3.97e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 65/200 | 1.31 | 5.38e-03 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 11/200 | 2.13 | 5.96e-03 | - | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 10/200 | 2.12 | 8.35e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 76/200 | 2.77 | 1.93e-18 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 47/200 | 3.79 | 2.74e-16 | - | no |
| C | 3 | GO:0044464 | cell part | 147/200 | 1.61 | 3.75e-16 | - | yes |
| C | 5 | GO:0009505 | plant-type cell wall | 18/200 | 11.42 | 2.80e-15 | - | no |
| C | 5 | GO:0031225 | anchored to membrane | 17/200 | 11.44 | 1.42e-14 | - | no |
| C | 4 | GO:0005618 | cell wall | 23/200 | 6.93 | 4.99e-14 | - | no |
| C | 3 | GO:0030312 | external encapsulating structure | 23/200 | 6.88 | 5.83e-14 | - | no |
| C | 5 | GO:0005794 | Golgi apparatus | 10/200 | 7.63 | 9.80e-08 | - | no |
| C | 4 | GO:0044459 | plasma membrane part | 10/200 | 7.56 | 1.08e-07 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 19/200 | 3.54 | 5.20e-07 | - | no |
| C | 5 | GO:0005773 | vacuole | 14/200 | 4.06 | 2.35e-06 | - | yes |
| C | 3 | GO:0044425 | membrane part | 22/200 | 2.78 | 4.86e-06 | - | no |
| C | 3 | GO:0048046 | apoplast | 10/200 | 5.07 | 5.39e-06 | - | no |
| C | 4 | GO:0009579 | thylakoid | 11/200 | 4.42 | 8.83e-06 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 54/200 | 1.56 | 2.32e-04 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 67/200 | 1.45 | 2.85e-04 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 64/200 | 1.46 | 3.66e-04 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 64/200 | 1.46 | 3.67e-04 | - | yes |
| C | 4 | GO:0005737 | cytoplasm | 56/200 | 1.50 | 4.85e-04 | - | yes |
| C | 5 | GO:0044434 | chloroplast part | 13/200 | 2.35 | 1.45e-03 | - | no |
| C | 3 | GO:0044424 | intracellular part | 69/200 | 1.35 | 1.70e-03 | - | yes |
| C | 4 | GO:0044435 | plastid part | 13/200 | 2.28 | 1.86e-03 | - | no |
| C | 3 | GO:0005622 | intracellular | 69/200 | 1.30 | 5.37e-03 | - | yes |
| C | 5 | GO:0009536 | plastid | 29/200 | 1.57 | 5.56e-03 | - | no |
| M | 5 | GO:0016758 | transferase activity, transferring hexosyl groups | 13/200 | 7.33 | 3.71e-09 | - | no |
| M | 4 | GO:0016757 | transferase activity, transferring glycosyl groups | 15/200 | 5.14 | 4.76e-08 | - | no |
| M | 3 | GO:0016740 | transferase activity | 35/200 | 2.14 | 5.83e-06 | - | no |
| PS | 5 | PO:0020038 | petiole | 186/200 | 2.44 | 2.94e-62 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 187/200 | 2.27 | 2.32e-57 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 177/200 | 2.41 | 8.65e-54 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 180/200 | 2.33 | 1.49e-53 | - | yes |
| PS | 4 | PO:0009025 | leaf | 189/200 | 2.06 | 2.15e-51 | - | yes |
| PS | 3 | PO:0009013 | meristem | 179/200 | 2.23 | 1.66e-49 | - | yes |
| PS | 5 | PO:0008037 | seedling | 184/200 | 2.08 | 2.77e-48 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 174/200 | 2.24 | 1.70e-46 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 179/200 | 2.13 | 2.62e-46 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 183/200 | 2.03 | 1.19e-45 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 191/200 | 1.86 | 2.30e-45 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 185/200 | 1.96 | 1.89e-44 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 185/200 | 1.96 | 1.89e-44 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 178/200 | 2.07 | 1.80e-43 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 176/200 | 2.10 | 3.22e-43 | - | yes |
| PS | 3 | PO:0009032 | petal | 179/200 | 2.04 | 3.32e-43 | - | yes |
| PS | 3 | PO:0009031 | sepal | 182/200 | 1.97 | 1.31e-42 | - | yes |
| PS | 4 | PO:0009009 | embryo | 184/200 | 1.90 | 1.78e-41 | - | yes |
| PS | 3 | PO:0009006 | shoot | 191/200 | 1.76 | 8.42e-41 | - | yes |
| PS | 3 | PO:0009010 | seed | 184/200 | 1.88 | 1.51e-40 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 171/200 | 2.10 | 2.16e-40 | - | yes |
| PS | 4 | PO:0009001 | fruit | 184/200 | 1.87 | 3.69e-40 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 184/200 | 1.87 | 3.69e-40 | - | yes |
| PS | 4 | PO:0009047 | stem | 172/200 | 2.04 | 7.22e-39 | - | yes |
| PS | 5 | PO:0009046 | flower | 185/200 | 1.78 | 4.77e-37 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 185/200 | 1.77 | 1.34e-36 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 165/200 | 1.99 | 9.65e-34 | - | yes |
| PS | 3 | PO:0009005 | root | 171/200 | 1.90 | 1.11e-33 | - | yes |
| PS | 5 | PO:0000349 | epidermal initial | 39/200 | 3.46 | 2.18e-12 | - | no |
| PS | 4 | PO:0005679 | epidermis | 41/200 | 3.31 | 2.36e-12 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 41/200 | 3.31 | 2.40e-12 | - | no |
| PS | 4 | PO:0004011 | initial cell | 39/200 | 3.44 | 2.66e-12 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 39/200 | 3.43 | 2.80e-12 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 40/200 | 3.35 | 2.97e-12 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 38/200 | 3.42 | 6.11e-12 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 38/200 | 3.39 | 7.55e-12 | - | no |
| PS | 4 | PO:0000293 | guard cell | 37/200 | 3.44 | 9.74e-12 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 37/200 | 3.42 | 1.11e-11 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 37/200 | 3.42 | 1.17e-11 | - | no |
| PS | 5 | PO:0000014 | rosette leaf | 10/200 | 5.73 | 1.66e-06 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 48/200 | 1.65 | 1.38e-04 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 179/200 | 2.33 | 1.05e-52 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 179/200 | 2.33 | 1.15e-52 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 184/200 | 2.19 | 6.08e-52 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 184/200 | 2.19 | 6.31e-52 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 184/200 | 2.17 | 2.09e-51 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 172/200 | 2.10 | 9.76e-41 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 183/200 | 1.89 | 4.12e-40 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 183/200 | 1.85 | 8.61e-39 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 170/200 | 2.06 | 1.38e-38 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 176/200 | 1.95 | 3.04e-38 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 176/200 | 1.95 | 6.06e-38 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 184/200 | 1.81 | 1.58e-37 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 185/200 | 1.77 | 1.52e-36 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 168/200 | 2.02 | 2.82e-36 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 162/200 | 2.04 | 8.38e-34 | - | yes |
| KW | 0 | plasma | - | 46/200 | 4.01 | 6.92e-17 | - | no |
| KW | 0 | membrane | - | 72/200 | 2.70 | 9.20e-17 | - | no |
| KW | 0 | anchored | - | 17/200 | 11.09 | 2.47e-14 | - | no |
| KW | 0 | apparatus | - | 10/200 | 10.14 | 5.20e-09 | - | no |
| KW | 0 | glycosyl | - | 19/200 | 4.46 | 1.30e-08 | - | no |
| KW | 0 | golgi | - | 11/200 | 6.63 | 1.29e-07 | - | no |
| KW | 0 | groups | - | 15/200 | 4.59 | 2.20e-07 | - | no |
| KW | 0 | transferring | - | 15/200 | 4.50 | 2.87e-07 | - | no |
| KW | 0 | encodes | - | 48/200 | 1.88 | 4.27e-06 | - | no |
| KW | 0 | localized | - | 10/200 | 4.85 | 8.22e-06 | - | no |
| KW | 0 | carbohydrate | - | 14/200 | 3.57 | 1.08e-05 | - | no |
| KW | 0 | transferase | - | 18/200 | 2.93 | 1.44e-05 | - | no |
| KW | 0 | vacuole | - | 12/200 | 3.81 | 1.94e-05 | - | yes |
| KW | 0 | process | - | 38/200 | 1.86 | 6.18e-05 | - | no |
| KW | 0 | active | - | 20/200 | 2.44 | 7.90e-05 | - | no |
| KW | 0 | function | - | 31/200 | 1.99 | 8.05e-05 | - | no |
| KW | 0 | lipid | - | 11/200 | 3.20 | 1.93e-04 | - | no |
| KW | 0 | biosynthetic | - | 17/200 | 2.38 | 3.24e-04 | - | no |
| KW | 0 | alpha | - | 17/200 | 2.33 | 4.14e-04 | - | no |
| KW | 0 | subgroup | - | 11/200 | 2.71 | 8.53e-04 | - | no |
| KW | 0 | response | - | 31/200 | 1.73 | 9.50e-04 | - | yes |
| KW | 0 | carrier | - | 10/200 | 2.49 | 2.50e-03 | - | no |
| KW | 0 | ipr008271 | - | 11/200 | 2.25 | 3.92e-03 | - | no |
| KW | 0 | ipr017441 | - | 10/200 | 2.33 | 4.17e-03 | - | no |
| KW | 0 | stimulus | - | 10/200 | 2.32 | 4.26e-03 | - | no |
| KW | 0 | synthase | - | 10/200 | 2.28 | 4.91e-03 | - | no |
| KW | 0 | member | - | 19/200 | 1.73 | 7.04e-03 | - | no |
| KW | 0 | oxidoreductase | - | 10/200 | 2.15 | 7.56e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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