OMAT4P002600http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u400026000000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P013660 | 0.959814 | - | AT3G51240 | F3H (FLAVANONE 3-HYDROXYLASE) | AT3G51238 | other RNA |
| OMAT1P007300 | 0.948673 | - | AT1G19950 | HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) | - | - |
| OMAT1P008460 | 0.944574 | - | AT1G23010 | LPR1 (Low Phosphate Root1) | - | - |
| OMAT5P106380 | 0.942527 | - | AT5G22020 | strictosidine synthase family protein | - | - |
| OMAT2P006620 | 0.928557 | - | AT2G29050 | ATRBL1 (Arabidopsis thaliana Rhomboid-like 1) | - | - |
| OMAT1P121410 | 0.925829 | - | AT1G80540 | unknown protein | - | - |
| OMAT5P004740 | 0.922548 | - | AT5G13930 | TT4 (TRANSPARENT TESTA 4) | - | - |
| OMAT1P007260 | 0.921801 | - | AT1G19830 | auxin-responsive protein, putative | - | - |
| OMAT4P010590 | 0.919045 | - | AT4G31840 | plastocyanin-like domain-containing protein | - | - |
| OMAT5P116080 | 0.919002 | - | AT5G60140 | transcriptional factor B3 family protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P005910 | -0.783992 | - | AT2G27050 | EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) | - | - |
| OMAT3P012730 | -0.704612 | - | - | - | AT3G48560 | CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) |
| OMAT5P115900 | -0.704258 | - | AT5G59540 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | - | - |
| OMAT2P105220 | -0.697139 | - | - | - | AT2G27050 | EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) |
| OMAT2P012910 | -0.696989 | - | - | - | AT2G45820 | DNA-binding protein, putative |
| OMAT4P107810 | -0.692655 | - | AT4G28025 | unknown protein | - | - |
| OMAT5P118140 | -0.691441 | - | - | - | AT5G65960 | unknown protein |
| OMAT5P104760 | -0.690087 | - | AT5G16660 | unknown protein | - | - |
| OMAT1P101320 | -0.688358 | - | AT1G05010 | EFE (ETHYLENE-FORMING ENZYME) | - | - |
| OMAT1P106810 | -0.68145 | - | AT1G21130 | O-methyltransferase, putative | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.64e-13 | :20 terms with high significance | |
| 2.64e-13 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0009698 | phenylpropanoid metabolic process | 10/200 | 9.78 | 7.58e-09 | - | no |
| B | 3 | GO:0019748 | secondary metabolic process | 12/200 | 5.18 | 6.90e-07 | - | no |
| B | 5 | GO:0006575 | cellular amino acid derivative metabolic process | 10/200 | 5.77 | 1.55e-06 | - | no |
| B | 4 | GO:0009908 | flower development | 10/200 | 5.49 | 2.53e-06 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 26/200 | 2.45 | 8.27e-06 | - | no |
| B | 3 | GO:0022414 | reproductive process | 18/200 | 2.99 | 1.13e-05 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 17/200 | 3.09 | 1.20e-05 | - | no |
| B | 4 | GO:0006725 | cellular aromatic compound metabolic process | 10/200 | 4.63 | 1.26e-05 | - | no |
| B | 3 | GO:0009791 | post-embryonic development | 17/200 | 2.87 | 3.10e-05 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 22/200 | 2.46 | 3.45e-05 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 15/200 | 3.08 | 3.56e-05 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 10/200 | 3.60 | 1.22e-04 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 10/200 | 3.48 | 1.64e-04 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 13/200 | 2.86 | 2.09e-04 | - | no |
| B | 4 | GO:0009314 | response to radiation | 10/200 | 3.37 | 2.18e-04 | - | no |
| B | 4 | GO:0048513 | organ development | 12/200 | 2.71 | 5.55e-04 | - | no |
| B | 4 | GO:0048731 | system development | 12/200 | 2.71 | 5.62e-04 | - | no |
| B | 4 | GO:0006519 | cellular amino acid and derivative metabolic process | 10/200 | 2.88 | 8.08e-04 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 14/200 | 2.09 | 3.12e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 66/200 | 1.33 | 3.41e-03 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 17/200 | 1.89 | 4.13e-03 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 11/200 | 2.13 | 5.96e-03 | - | no |
| B | 5 | GO:0006350 | transcription | 18/200 | 1.76 | 7.01e-03 | - | no |
| B | 4 | GO:0044249 | cellular biosynthetic process | 40/200 | 1.42 | 7.89e-03 | - | no |
| C | 5 | GO:0031225 | anchored to membrane | 14/200 | 9.42 | 3.26e-11 | - | no |
| C | 3 | GO:0044464 | cell part | 127/200 | 1.39 | 1.46e-07 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 18/200 | 3.36 | 2.15e-06 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 46/200 | 1.89 | 5.79e-06 | - | no |
| C | 3 | GO:0016020 | membrane | 48/200 | 1.75 | 2.87e-05 | - | no |
| C | 3 | GO:0044425 | membrane part | 20/200 | 2.53 | 4.86e-05 | - | no |
| C | 4 | GO:0005886 | plasma membrane | 26/200 | 2.10 | 1.17e-04 | - | no |
| M | 4 | GO:0003677 | DNA binding | 29/200 | 2.09 | 5.27e-05 | 0 | no |
| M | 3 | GO:0003700 | transcription factor activity | 22/200 | 2.18 | 2.08e-04 | - | no |
| M | 3 | GO:0005515 | protein binding | 27/200 | 1.73 | 1.95e-03 | 7.00E-46 | yes |
| PS | 5 | PO:0009052 | pedicel | 143/200 | 1.76 | 2.23e-19 | - | no |
| PS | 3 | PO:0009031 | sepal | 150/200 | 1.62 | 2.41e-17 | - | no |
| PS | 3 | PO:0009032 | petal | 144/200 | 1.64 | 1.67e-16 | - | no |
| PS | 3 | PO:0009010 | seed | 153/200 | 1.56 | 3.07e-16 | - | no |
| PS | 4 | PO:0009049 | inflorescence | 159/200 | 1.52 | 3.18e-16 | - | no |
| PS | 3 | PO:0009006 | shoot | 162/200 | 1.49 | 4.91e-16 | - | no |
| PS | 4 | PO:0009001 | fruit | 153/200 | 1.56 | 5.47e-16 | - | no |
| PS | 3 | PO:0006342 | infructescence | 153/200 | 1.56 | 5.47e-16 | - | no |
| PS | 5 | PO:0009046 | flower | 158/200 | 1.52 | 5.75e-16 | - | no |
| PS | 4 | PO:0009009 | embryo | 151/200 | 1.56 | 9.44e-16 | - | no |
| PS | 3 | PO:0006001 | phyllome | 152/200 | 1.48 | 1.68e-13 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 144/200 | 1.53 | 2.64e-13 | - | no |
| PS | 4 | PO:0008033 | phyllome whorl | 144/200 | 1.53 | 2.64e-13 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 125/200 | 1.49 | 1.57e-09 | - | no |
| PS | 4 | PO:0009026 | sporophyll | 128/200 | 1.42 | 2.07e-08 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 117/200 | 1.36 | 3.77e-06 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 105/200 | 1.27 | 6.34e-04 | - | no |
| PS | 4 | PO:0009025 | leaf | 109/200 | 1.19 | 6.36e-03 | - | no |
| PG | 5 | PO:0001185 | C globular stage | 148/200 | 1.80 | 5.93e-22 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 150/200 | 1.67 | 1.43e-18 | - | no |
| PG | 3 | PO:0001170 | seed development stages | 150/200 | 1.66 | 2.33e-18 | - | no |
| PG | 4 | PO:0007616 | 4 anthesis | 153/200 | 1.58 | 1.14e-16 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 152/200 | 1.54 | 2.87e-15 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 157/200 | 1.50 | 4.40e-15 | - | no |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 154/200 | 1.51 | 7.93e-15 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 122/200 | 1.47 | 8.86e-09 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 117/200 | 1.47 | 2.90e-08 | - | no |
| PG | 5 | PO:0004507 | D bilateral stage | 119/200 | 1.44 | 5.91e-08 | - | no |
| KW | 0 | globular | - | 31/200 | 8.26 | 1.60e-20 | - | no |
| KW | 0 | anchored | - | 14/200 | 9.13 | 5.11e-11 | - | no |
| KW | 0 | anthesis | - | 37/200 | 2.82 | 2.87e-09 | - | no |
| KW | 0 | differentiation | - | 36/200 | 2.38 | 3.44e-07 | - | no |
| KW | 0 | petal | - | 35/200 | 2.40 | 4.19e-07 | - | no |
| KW | 0 | stage | - | 42/200 | 2.17 | 4.57e-07 | - | no |
| KW | 0 | expansion | - | 35/200 | 2.38 | 5.00e-07 | - | no |
| KW | 0 | endomembrane | - | 46/200 | 1.95 | 2.75e-06 | - | no |
| KW | 0 | system | - | 46/200 | 1.90 | 5.38e-06 | - | no |
| KW | 0 | embryo | - | 19/200 | 2.74 | 2.42e-05 | - | no |
| KW | 0 | membrane | - | 47/200 | 1.77 | 2.90e-05 | - | no |
| KW | 0 | inhibitor | - | 11/200 | 3.68 | 5.27e-05 | - | no |
| KW | 0 | development | - | 18/200 | 2.58 | 8.12e-05 | - | no |
| KW | 0 | plasma | - | 25/200 | 2.18 | 8.36e-05 | - | no |
| KW | 0 | conserved | - | 28/200 | 2.07 | 8.65e-05 | - | no |
| KW | 0 | enzyme | - | 10/200 | 2.96 | 6.33e-04 | - | no |
| KW | 0 | transcription | - | 26/200 | 1.79 | 1.37e-03 | - | no |
| KW | 0 | terminal | - | 31/200 | 1.61 | 3.00e-03 | - | no |
| KW | 0 | stimulus | - | 10/200 | 2.32 | 4.26e-03 | - | no |
| KW | 0 | biosynthetic | - | 14/200 | 1.96 | 5.70e-03 | - | no |
| KW | 0 | response | - | 28/200 | 1.56 | 6.81e-03 | - | no |
| KW | 0 | alpha | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| KW | 0 | encodes | - | 37/200 | 1.45 | 7.61e-03 | - | no |
| KW | 0 | dependent | - | 22/200 | 1.64 | 8.03e-03 | - | no |
| KW | 0 | active | - | 15/200 | 1.83 | 8.41e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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