OMAT4P002705http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u400027050000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P010960 | 0.932652 | - | AT2G41000 | heat shock protein binding | - | - |
| OMAT2P006680 | 0.930563 | - | AT2G29140 | APUM3 (Arabidopsis Pumilio 3) | - | - |
| OMAT2P008620 | 0.920725 | - | AT2G34730 | myosin heavy chain-related | - | - |
| OMAT1P005460 | 0.909407 | - | AT1G15280 | glycine-rich protein | - | - |
| OMAT1P015790 | 0.906183 | - | AT1G56460 | PAPA-1-like family protein / zinc finger (HIT type) family protein | - | - |
| OMAT1P006150 | 0.900919 | - | AT1G16810 | unknown protein | - | - |
| OMAT1P017550 | 0.900778 | - | AT1G64050 | unknown protein | - | - |
| OMAT5P020490 | 0.896647 | - | AT5G66010 | RNA binding / nucleic acid binding / nucleotide binding | - | - |
| OMAT1P002780 | 0.89151 | - | AT1G08460 | HDA08 | - | - |
| OMAT5P010120 | 0.887996 | - | AT5G38040 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P113280 | -0.894684 | - | AT3G54890 | LHCA1 | - | - |
| OMAT1P109880 | -0.879079 | - | AT1G31330 | PSAF (photosystem I subunit F) | - | - |
| OMAT4P002520 | -0.865471 | - | AT4G10340 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) | - | - |
| OMAT1P113810 | -0.865046 | - | AT1G55670 | PSAG (PHOTOSYSTEM I SUBUNIT G) | - | - |
| OMAT4P000390 | -0.859082 | - | AT4G01130 | acetylesterase, putative | - | - |
| OMAT4P101480 | -0.85857 | - | AT4G05180 | PSBQ-2 | - | - |
| OMAT2P105345 | -0.852391 | - | AT2G27385 | unknown protein | - | - |
| OMAT2P105010 | -0.851878 | - | - | - | AT2G26500 | cytochrome b6f complex subunit (petM), putative |
| OMAT3P106900 | -0.850977 | - | AT3G21055 | PSBTN (photosystem II subunit T) | - | - |
| OMAT1P016710 | -0.848741 | - | AT1G61520 | LHCA3 | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.75e-18 | :20 terms with high significance | |
| 2.75e-18 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| C | 5 | GO:0005634 | nucleus | 30/200 | 1.92 | 1.95e-04 | 1.32E-19 | no |
| C | 3 | GO:0005622 | intracellular | 72/200 | 1.35 | 1.32e-03 | 8.12E-16 | no |
| C | 3 | GO:0044424 | intracellular part | 69/200 | 1.35 | 1.70e-03 | 4.23E-17 | no |
| C | 3 | GO:0043229 | intracellular organelle | 62/200 | 1.34 | 3.86e-03 | - | no |
| M | 3 | GO:0005515 | protein binding | 30/200 | 1.92 | 1.98e-04 | 1.32E-19 | yes |
| M | 3 | GO:0003676 | nucleic acid binding | 37/200 | 1.56 | 2.22e-03 | - | no |
| PS | 4 | PO:0009047 | stem | 154/200 | 1.83 | 1.98e-24 | 4.71E-16 | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 146/200 | 1.88 | 2.09e-23 | - | yes |
| PS | 3 | PO:0009013 | meristem | 146/200 | 1.82 | 9.59e-22 | 5.93E-18 | yes |
| PS | 4 | PO:0000037 | shoot apex | 149/200 | 1.73 | 3.27e-20 | 8.00E-19 | yes |
| PS | 5 | PO:0009052 | pedicel | 143/200 | 1.76 | 2.23e-19 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 144/200 | 1.75 | 2.55e-19 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 145/200 | 1.73 | 4.31e-19 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 144/200 | 1.72 | 1.84e-18 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 137/200 | 1.77 | 2.75e-18 | - | yes |
| PS | 3 | PO:0009005 | root | 149/200 | 1.66 | 4.95e-18 | 1.43E-16 | yes |
| PS | 4 | PO:0009026 | sporophyll | 148/200 | 1.64 | 1.85e-17 | - | yes |
| PS | 3 | PO:0009031 | sepal | 150/200 | 1.62 | 2.41e-17 | - | yes |
| PS | 4 | PO:0009009 | embryo | 152/200 | 1.57 | 2.72e-16 | 1.32E-19 | yes |
| PS | 3 | PO:0020091 | male gametophyte | 139/200 | 1.68 | 2.73e-16 | - | yes |
| PS | 3 | PO:0009010 | seed | 153/200 | 1.56 | 3.07e-16 | 2.43E-17 | yes |
| PS | 4 | PO:0020030 | cotyledon | 129/200 | 1.76 | 3.91e-16 | 1.32E-19 | yes |
| PS | 4 | PO:0009001 | fruit | 153/200 | 1.56 | 5.47e-16 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 153/200 | 1.56 | 5.47e-16 | - | yes |
| PS | 3 | PO:0009032 | petal | 143/200 | 1.63 | 5.65e-16 | - | yes |
| PS | 4 | PO:0009025 | leaf | 147/200 | 1.60 | 6.38e-16 | 4.19E-17 | yes |
| PS | 5 | PO:0008034 | leaf whorl | 149/200 | 1.58 | 8.01e-16 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 149/200 | 1.58 | 8.01e-16 | - | yes |
| PS | 5 | PO:0008037 | seedling | 143/200 | 1.62 | 1.16e-15 | 7.62E-23 | yes |
| PS | 4 | PO:0009049 | inflorescence | 155/200 | 1.48 | 4.56e-14 | - | yes |
| PS | 5 | PO:0009046 | flower | 154/200 | 1.48 | 7.71e-14 | 1.14E-17 | yes |
| PS | 5 | PO:0020038 | petiole | 127/200 | 1.67 | 8.94e-14 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 151/200 | 1.47 | 5.18e-13 | - | yes |
| PS | 3 | PO:0009006 | shoot | 155/200 | 1.43 | 2.34e-12 | 1.15E-17 | yes |
| PS | 3 | PO:0000084 | sperm cell | 68/200 | 2.10 | 1.98e-10 | - | no |
| PS | 3 | PO:0020097 | generative cell | 68/200 | 2.10 | 1.98e-10 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 51/200 | 1.75 | 1.60e-05 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 150/200 | 1.81 | 1.21e-22 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 149/200 | 1.81 | 2.17e-22 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 144/200 | 1.81 | 5.30e-21 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 140/200 | 1.82 | 3.41e-20 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 140/200 | 1.82 | 3.61e-20 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 152/200 | 1.69 | 9.40e-20 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 152/200 | 1.68 | 1.55e-19 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 144/200 | 1.75 | 1.56e-19 | 7.78E-19 | yes |
| PG | 5 | PO:0007133 | leaf production | 145/200 | 1.72 | 6.07e-19 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 145/200 | 1.72 | 6.21e-19 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 145/200 | 1.71 | 1.30e-18 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 153/200 | 1.55 | 8.38e-16 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 155/200 | 1.52 | 2.33e-15 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 149/200 | 1.54 | 1.53e-14 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 155/200 | 1.48 | 4.95e-14 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 59/200 | 2.01 | 2.10e-08 | - | yes |
| KW | 0 | nuclear | - | 13/200 | 4.23 | 2.99e-06 | 1.32E-19 | no |
| KW | 0 | finger | - | 22/200 | 2.38 | 5.71e-05 | 1.32E-19 | no |
| KW | 0 | cellular_component | - | 72/200 | 1.48 | 8.28e-05 | - | no |
| KW | 0 | ubiquitin | - | 12/200 | 2.67 | 6.36e-04 | 3.14E-21 | yes |
| KW | 0 | biological_process | - | 79/200 | 1.32 | 1.41e-03 | - | no |
| KW | 0 | region | - | 25/200 | 1.73 | 2.63e-03 | 1.08E-15 | yes |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | 1.32E-19 | yes |
| KW | 0 | containing | - | 27/200 | 1.62 | 4.73e-03 | 0 | no |
| KW | 0 | nucleus | - | 22/200 | 1.71 | 5.19e-03 | 1.32E-19 | no |
| KW | 0 | factor | - | 27/200 | 1.54 | 9.02e-03 | 2.79E-15 | no |
| (*1) | [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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