OMAT4P100810http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u401008100000i
Other supporting information
| Gene Model | |
 | |
| Correlation Plot | |
 | |
Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P103180 | 0.905016 | - | AT5G11440 | CID5 | - | - |
| OMAT2P106340 | 0.904092 | - | AT2G30505 | Expressed protein | - | - |
| OMAT3P000480 | 0.900484 | - | AT3G02030 | hydrolase, alpha/beta fold family protein | - | - |
| OMAT3P001790 | 0.895092 | - | AT3G05150 | sugar transporter family protein | - | - |
| OMAT1P112800 | 0.88909 | - | AT1G52240 | ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11) | - | - |
| OMAT4P107680 | 0.888907 | - | AT4G27580,AT4G27585 | [AT4G27580]unknown protein, [AT4G27585]band 7 family protein | - | - |
| OMAT5P006080 | 0.873391 | - | AT5G17480 | APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) | - | - |
| OMAT5P005300 | 0.871882 | - | AT5G15430 | calmodulin-binding protein-related | - | - |
| OMAT1P120880 | 0.870982 | - | AT1G79250 | AGC1.7 (AGC KINASE 1.7) | - | - |
| OMAT1P020900 | 0.869787 | - | AT1G72330 | ALAAT2 (ALANINE AMINOTRANSFERASE 2) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P117720 | -0.684198 | - | AT5G64840 | ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) | - | - |
| OMAT3P012580 | -0.677699 | - | AT3G48320 | CYP71A21 | - | - |
| OMAT5P017840 | -0.674496 | - | AT5G58770 | dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative | - | - |
| OMAT1P015160 | -0.671877 | - | AT1G54520 | unknown protein | - | - |
| OMAT2P005890 | -0.654515 | - | AT2G26975 | copper transporter, putative | - | - |
| OMAT4P003550 | -0.648734 | - | - | - | - | - |
| OMAT1P117230 | -0.646941 | - | AT1G68830 | STN7 (Stt7 homolog STN7) | - | - |
| OMAT5P105830 | -0.642935 | - | AT5G19850 | hydrolase, alpha/beta fold family protein | - | - |
| OMAT1P002300 | -0.639093 | - | AT1G07180 | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) | - | - |
| OMAT2P013445 | -0.637219 | - | AT2G46910 | plastid-lipid associated protein PAP / fibrillin family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.86e-19 | :20 terms with high significance | |
| 2.86e-19 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0032989 | cellular component morphogenesis | 12/200 | 7.18 | 1.62e-08 | - | no |
| B | 3 | GO:0048869 | cellular developmental process | 12/200 | 4.32 | 5.11e-06 | - | no |
| B | 3 | GO:0006810 | transport | 25/200 | 2.44 | 1.28e-05 | 8.46E-16 | yes |
| B | 3 | GO:0051234 | establishment of localization | 25/200 | 2.43 | 1.35e-05 | - | yes |
| B | 4 | GO:0006629 | lipid metabolic process | 14/200 | 3.22 | 3.56e-05 | - | no |
| B | 3 | GO:0009653 | anatomical structure morphogenesis | 12/200 | 3.57 | 3.78e-05 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 16/200 | 2.41 | 3.96e-04 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 16/200 | 2.41 | 4.00e-04 | - | no |
| B | 3 | GO:0033036 | macromolecule localization | 10/200 | 2.89 | 7.75e-04 | - | yes |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 13/200 | 2.50 | 8.12e-04 | - | no |
| B | 3 | GO:0022414 | reproductive process | 13/200 | 2.16 | 3.12e-03 | - | no |
| B | 3 | GO:0009056 | catabolic process | 11/200 | 2.31 | 3.25e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 16/200 | 1.79 | 8.75e-03 | - | no |
| C | 3 | GO:0012505 | endomembrane system | 65/200 | 2.68 | 8.62e-15 | - | no |
| C | 3 | GO:0044464 | cell part | 130/200 | 1.42 | 1.34e-08 | - | yes |
| C | 3 | GO:0044425 | membrane part | 20/200 | 2.53 | 4.86e-05 | - | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 15/200 | 2.80 | 1.08e-04 | - | no |
| C | 5 | GO:0016021 | integral to membrane | 10/200 | 3.25 | 2.91e-04 | - | no |
| M | 5 | GO:0004091 | carboxylesterase activity | 15/200 | 7.49 | 2.29e-10 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 40/200 | 2.56 | 9.84e-09 | - | no |
| M | 4 | GO:0016788 | hydrolase activity, acting on ester bonds | 19/200 | 3.20 | 2.48e-06 | - | no |
| M | 4 | GO:0016798 | hydrolase activity, acting on glycosyl bonds | 12/200 | 4.51 | 3.17e-06 | - | no |
| M | 5 | GO:0015075 | ion transmembrane transporter activity | 13/200 | 4.15 | 3.74e-06 | - | no |
| M | 5 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | 11/200 | 4.44 | 8.41e-06 | - | no |
| M | 4 | GO:0022891 | substrate-specific transmembrane transporter activity | 15/200 | 3.40 | 1.05e-05 | - | no |
| M | 4 | GO:0022804 | active transmembrane transporter activity | 12/200 | 3.54 | 4.14e-05 | - | no |
| M | 3 | GO:0022857 | transmembrane transporter activity | 16/200 | 2.85 | 5.50e-05 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 17/200 | 2.74 | 5.71e-05 | - | no |
| M | 5 | GO:0016301 | kinase activity | 20/200 | 2.49 | 6.22e-05 | - | no |
| M | 3 | GO:0022892 | substrate-specific transporter activity | 15/200 | 2.90 | 7.00e-05 | - | yes |
| M | 3 | GO:0016740 | transferase activity | 31/200 | 1.90 | 1.92e-04 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 20/200 | 2.18 | 3.70e-04 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 16/200 | 1.76 | 9.90e-03 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 98/200 | 3.36 | 1.11e-31 | - | yes |
| PS | 3 | PO:0009032 | petal | 153/200 | 1.75 | 9.26e-22 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 157/200 | 1.66 | 1.87e-20 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 157/200 | 1.66 | 1.87e-20 | - | yes |
| PS | 5 | PO:0009046 | flower | 163/200 | 1.57 | 6.36e-19 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 163/200 | 1.56 | 1.35e-18 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 160/200 | 1.56 | 7.32e-18 | - | yes |
| PS | 3 | PO:0009031 | sepal | 150/200 | 1.62 | 2.41e-17 | - | yes |
| PS | 3 | PO:0009006 | shoot | 163/200 | 1.50 | 1.29e-16 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 129/200 | 1.56 | 1.48e-11 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 115/200 | 1.28 | 1.46e-04 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 103/200 | 1.23 | 2.64e-03 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 102/200 | 1.22 | 3.88e-03 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 103/200 | 3.52 | 1.95e-35 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 163/200 | 1.60 | 4.46e-20 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 165/200 | 1.58 | 7.99e-20 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 158/200 | 1.63 | 1.34e-19 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 159/200 | 1.61 | 2.86e-19 | - | yes |
| KW | 0 | anthesis | - | 131/200 | 9.97 | 7.22e-106 | - | no |
| KW | 0 | petal | - | 132/200 | 9.05 | 2.44e-101 | - | no |
| KW | 0 | expansion | - | 132/200 | 8.98 | 6.44e-101 | - | no |
| KW | 0 | differentiation | - | 132/200 | 8.73 | 2.63e-99 | - | no |
| KW | 0 | stage | - | 137/200 | 7.08 | 6.71e-92 | - | no |
| KW | 0 | germinated | - | 81/200 | 14.64 | 8.27e-74 | - | no |
| KW | 0 | pollen | - | 92/200 | 10.31 | 9.13e-71 | - | no |
| KW | 0 | mature | - | 88/200 | 9.84 | 1.42e-65 | - | no |
| KW | 0 | globular | - | 59/200 | 15.72 | 9.35e-55 | - | no |
| KW | 0 | whorl | - | 34/200 | 14.53 | 1.28e-30 | - | no |
| KW | 0 | sepal | - | 29/200 | 13.43 | 2.30e-25 | - | no |
| KW | 0 | flower | - | 38/200 | 4.98 | 3.82e-17 | - | no |
| KW | 0 | system | - | 67/200 | 2.77 | 5.40e-16 | - | no |
| KW | 0 | endomembrane | - | 66/200 | 2.79 | 5.99e-16 | - | no |
| KW | 0 | inhibitor | - | 19/200 | 6.36 | 2.86e-11 | - | no |
| KW | 0 | active | - | 31/200 | 3.79 | 4.19e-11 | 1.35E-15 | no |
| KW | 0 | storage | - | 12/200 | 10.56 | 1.49e-10 | - | no |
| KW | 0 | lipid | - | 18/200 | 5.24 | 2.16e-09 | - | no |
| KW | 0 | pectin | - | 11/200 | 7.26 | 4.79e-08 | - | no |
| KW | 0 | cation | - | 10/200 | 5.58 | 2.16e-06 | - | no |
| KW | 0 | member | - | 27/200 | 2.46 | 5.02e-06 | - | no |
| KW | 0 | phosphorylation | - | 18/200 | 2.93 | 1.48e-05 | - | no |
| KW | 0 | hydrolase | - | 20/200 | 2.74 | 1.50e-05 | - | no |
| KW | 0 | calcium | - | 11/200 | 4.13 | 1.73e-05 | - | no |
| KW | 0 | serine | - | 22/200 | 2.47 | 3.24e-05 | - | no |
| KW | 0 | ipr008271 | - | 15/200 | 3.07 | 3.61e-05 | - | no |
| KW | 0 | carbohydrate | - | 13/200 | 3.32 | 4.51e-05 | - | no |
| KW | 0 | gametophyte | - | 13/200 | 3.31 | 4.58e-05 | - | no |
| KW | 0 | threonine | - | 19/200 | 2.53 | 6.99e-05 | - | no |
| KW | 0 | glycoside | - | 10/200 | 3.80 | 7.66e-05 | - | no |
| KW | 0 | metabolic | - | 25/200 | 2.18 | 8.65e-05 | - | no |
| KW | 0 | catalytic | - | 23/200 | 2.26 | 8.70e-05 | - | no |
| KW | 0 | region | - | 29/200 | 2.01 | 1.12e-04 | - | yes |
| KW | 0 | transport | - | 22/200 | 2.26 | 1.22e-04 | 8.46E-16 | yes |
| KW | 0 | process | - | 37/200 | 1.81 | 1.35e-04 | - | no |
| KW | 0 | ipr000719 | - | 16/200 | 2.57 | 1.90e-04 | - | no |
| KW | 0 | ipr011009 | - | 16/200 | 2.47 | 2.92e-04 | - | no |
| KW | 0 | kinase | - | 22/200 | 2.08 | 3.89e-04 | - | no |
| KW | 0 | alpha | - | 17/200 | 2.33 | 4.14e-04 | 0 | yes |
| KW | 0 | enzyme | - | 10/200 | 2.96 | 6.33e-04 | - | no |
| KW | 0 | ipr017442 | - | 13/200 | 2.47 | 9.06e-04 | - | no |
| KW | 0 | integral | - | 10/200 | 2.80 | 9.94e-04 | - | no |
| KW | 0 | amino | - | 18/200 | 2.09 | 1.10e-03 | 1.80E-15 | no |
| KW | 0 | terminal | - | 31/200 | 1.61 | 3.00e-03 | - | no |
| KW | 0 | glycosyl | - | 10/200 | 2.35 | 3.96e-03 | - | no |
| KW | 0 | ipr017441 | - | 10/200 | 2.33 | 4.17e-03 | - | no |
| KW | 0 | biosynthetic | - | 14/200 | 1.96 | 5.70e-03 | - | no |
| KW | 0 | membrane | - | 38/200 | 1.43 | 8.81e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
Top Page
