OMAT4P101040http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u401010400000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P014940 | 0.901642 | - | AT3G54540 | ATGCN4 | - | - |
| OMAT1P022120 | 0.877174 | - | AT1G75660 | XRN3 | - | - |
| OMAT1P013040 | 0.850977 | - | AT1G47530 | ripening-responsive protein, putative | - | - |
| OMAT1P002100 | 0.806389 | - | AT1G06530 | myosin heavy chain-related | - | - |
| OMAT1P003980 | 0.798921 | - | AT1G11650 | RNA-binding protein 45 (RBP45), putative | - | - |
| OMAT3P010060 | 0.797897 | - | AT3G26730 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT5P001810 | 0.79224 | - | AT5G05540 | SDN2 (SMALL RNA DEGRADING NUCLEASE 2) | - | - |
| OMAT3P011075 | 0.786055 | - | AT3G29776 | transposable element gene | - | - |
| OMAT1P009865 | 0.779889 | - | AT1G27650 | ATU2AF35A | - | - |
| OMAT3P016960 | 0.777527 | - | AT3G60300 | RWD domain-containing protein | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P000120 | -0.839745 | - | AT5G01370 | unknown protein | - | - |
| OMAT1P109530 | -0.793735 | - | AT1G30120 | PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) | - | - |
| OMAT5P114570 | -0.792492 | - | AT5G55730 | FLA1 (FASCICLIN-LIKE ARAB INOGALACTAN 1) | - | - |
| OMAT4P102350 | -0.787995 | - | AT4G11820 | MVA1 | - | - |
| OMAT3P103830 | -0.782152 | - | AT3G11650 | NHL2 | - | - |
| OMAT3P115620 | -0.776244 | - | AT3G62600 | ATERDJ3B | - | - |
| OMAT2P111850 | -0.775784 | - | AT2G45970 | CYP86A8 | - | - |
| OMAT1P116920 | -0.771278 | - | AT1G67950 | RNA recognition motif (RRM)-containing protein | - | - |
| OMAT3P000900 | -0.77004 | - | AT3G02900 | unknown protein | - | - |
| OMAT3P104230 | -0.759345 | - | AT3G12870 | unknown protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.32e-37 | :20 terms with high significance | |
| 2.32e-37 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0009791 | post-embryonic development | 19/200 | 3.21 | 2.33e-06 | - | no |
| B | 3 | GO:0007275 | multicellular organismal development | 27/200 | 2.54 | 2.78e-06 | - | no |
| B | 4 | GO:0046907 | intracellular transport | 11/200 | 4.63 | 5.51e-06 | - | no |
| B | 4 | GO:0048608 | reproductive structure development | 16/200 | 3.28 | 9.30e-06 | - | no |
| B | 3 | GO:0022414 | reproductive process | 18/200 | 2.99 | 1.13e-05 | - | no |
| B | 5 | GO:0006396 | RNA processing | 10/200 | 4.52 | 1.58e-05 | - | no |
| B | 3 | GO:0051649 | establishment of localization in cell | 11/200 | 4.08 | 1.93e-05 | - | no |
| B | 3 | GO:0003006 | reproductive developmental process | 16/200 | 2.90 | 4.33e-05 | - | no |
| B | 3 | GO:0051641 | cellular localization | 11/200 | 3.74 | 4.52e-05 | - | no |
| B | 3 | GO:0006996 | organelle organization | 11/200 | 3.30 | 1.49e-04 | - | no |
| B | 3 | GO:0033036 | macromolecule localization | 11/200 | 3.18 | 2.06e-04 | - | no |
| B | 4 | GO:0034641 | cellular nitrogen compound metabolic process | 35/200 | 1.80 | 2.19e-04 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 20/200 | 2.23 | 2.68e-04 | - | no |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 35/200 | 1.76 | 3.19e-04 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 19/200 | 2.23 | 3.66e-04 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 30/200 | 1.78 | 7.17e-04 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 27/200 | 1.80 | 1.07e-03 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 18/200 | 2.00 | 1.78e-03 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 63/200 | 1.33 | 4.17e-03 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 10/200 | 2.27 | 5.01e-03 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 10/200 | 2.27 | 5.11e-03 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 10/200 | 2.23 | 5.75e-03 | - | no |
| C | 3 | GO:0005622 | intracellular | 88/200 | 1.65 | 3.62e-08 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 78/200 | 1.69 | 1.48e-07 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 74/200 | 1.68 | 4.18e-07 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 74/200 | 1.68 | 4.21e-07 | - | no |
| C | 3 | GO:0044424 | intracellular part | 81/200 | 1.59 | 1.09e-06 | - | no |
| C | 5 | GO:0005634 | nucleus | 32/200 | 2.05 | 3.55e-05 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 58/200 | 1.55 | 1.44e-04 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 54/200 | 1.56 | 2.32e-04 | - | no |
| C | 4 | GO:0044428 | nuclear part | 10/200 | 3.01 | 5.63e-04 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 51/200 | 2.15 | 2.96e-08 | - | no |
| M | 4 | GO:0003723 | RNA binding | 22/200 | 3.17 | 5.44e-07 | 2.00E-17 | no |
| M | 3 | GO:0000166 | nucleotide binding | 30/200 | 2.27 | 8.23e-06 | 1.00E-07 | yes |
| M | 5 | GO:0046872 | metal ion binding | 27/200 | 1.99 | 2.17e-04 | - | no |
| M | 3 | GO:0005515 | protein binding | 29/200 | 1.85 | 4.40e-04 | 2.00E-17 | no |
| M | 4 | GO:0043169 | cation binding | 27/200 | 1.88 | 5.38e-04 | - | no |
| M | 3 | GO:0043167 | ion binding | 27/200 | 1.88 | 5.38e-04 | 2.00E-17 | no |
| PS | 4 | PO:0009047 | stem | 178/200 | 2.11 | 6.95e-45 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 175/200 | 2.15 | 2.36e-44 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 167/200 | 2.15 | 1.20e-39 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 174/200 | 2.02 | 1.93e-39 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 172/200 | 2.05 | 2.85e-39 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 172/200 | 2.05 | 3.44e-39 | - | yes |
| PS | 3 | PO:0009013 | meristem | 168/200 | 2.09 | 2.21e-38 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 176/200 | 1.96 | 2.79e-38 | - | yes |
| PS | 4 | PO:0009025 | leaf | 177/200 | 1.92 | 9.10e-38 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 169/200 | 2.05 | 1.26e-37 | - | yes |
| PS | 5 | PO:0020038 | petiole | 163/200 | 2.14 | 2.32e-37 | - | yes |
| PS | 3 | PO:0009005 | root | 174/200 | 1.93 | 2.17e-36 | - | yes |
| PS | 5 | PO:0008037 | seedling | 172/200 | 1.95 | 7.64e-36 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 162/200 | 2.10 | 1.35e-35 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 157/200 | 2.14 | 1.75e-34 | - | yes |
| PS | 3 | PO:0009031 | sepal | 173/200 | 1.87 | 9.97e-34 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 174/200 | 1.85 | 3.05e-33 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 174/200 | 1.85 | 3.05e-33 | - | yes |
| PS | 3 | PO:0009032 | petal | 168/200 | 1.92 | 8.49e-33 | - | yes |
| PS | 3 | PO:0009010 | seed | 176/200 | 1.80 | 1.45e-32 | - | yes |
| PS | 4 | PO:0009001 | fruit | 176/200 | 1.79 | 3.26e-32 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 176/200 | 1.79 | 3.26e-32 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 179/200 | 1.75 | 4.45e-32 | - | yes |
| PS | 4 | PO:0009009 | embryo | 174/200 | 1.80 | 1.27e-31 | - | yes |
| PS | 5 | PO:0009046 | flower | 178/200 | 1.71 | 3.56e-30 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 178/200 | 1.70 | 9.14e-30 | - | yes |
| PS | 3 | PO:0009006 | shoot | 179/200 | 1.65 | 3.83e-28 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 155/200 | 1.87 | 4.77e-26 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 89/200 | 2.74 | 8.74e-22 | - | no |
| PS | 3 | PO:0020097 | generative cell | 89/200 | 2.74 | 8.74e-22 | - | no |
| PS | 4 | PO:0006345 | pollen tube | 60/200 | 2.06 | 6.63e-09 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 27/200 | 2.41 | 7.52e-06 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 26/200 | 2.40 | 1.16e-05 | - | no |
| PS | 4 | PO:0005679 | epidermis | 28/200 | 2.26 | 1.74e-05 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 28/200 | 2.26 | 1.76e-05 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 26/200 | 2.34 | 1.87e-05 | - | no |
| PS | 3 | PO:0004013 | epidermal cell | 27/200 | 2.26 | 2.36e-05 | - | no |
| PS | 4 | PO:0000293 | guard cell | 25/200 | 2.32 | 2.94e-05 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 25/200 | 2.31 | 3.17e-05 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 25/200 | 2.22 | 6.40e-05 | - | no |
| PS | 4 | PO:0004011 | initial cell | 25/200 | 2.20 | 7.11e-05 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 25/200 | 2.20 | 7.29e-05 | - | no |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 175/200 | 2.11 | 6.50e-43 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 174/200 | 2.11 | 1.95e-42 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 171/200 | 2.15 | 7.32e-42 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 171/200 | 2.08 | 8.81e-40 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 176/200 | 1.95 | 3.04e-38 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 176/200 | 1.95 | 6.06e-38 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 171/200 | 2.02 | 1.18e-37 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 164/200 | 2.13 | 1.36e-37 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 164/200 | 2.13 | 1.47e-37 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 170/200 | 2.02 | 3.33e-37 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 170/200 | 2.02 | 3.44e-37 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 180/200 | 1.77 | 1.76e-33 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 176/200 | 1.81 | 3.64e-33 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 176/200 | 1.78 | 5.94e-32 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 180/200 | 1.72 | 1.55e-31 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 64/200 | 2.19 | 1.41e-10 | - | no |
| PG | 4 | PO:0007057 | 0 germination | 10/200 | 6.02 | 1.03e-06 | - | no |
| KW | 0 | ipr012677 | - | 17/200 | 11.00 | 2.83e-14 | - | no |
| KW | 0 | plait | - | 17/200 | 11.00 | 2.83e-14 | - | no |
| KW | 0 | ipr000504 | - | 16/200 | 10.19 | 4.91e-13 | - | no |
| KW | 0 | motif | - | 25/200 | 5.14 | 4.02e-12 | - | no |
| KW | 0 | recognition | - | 17/200 | 7.72 | 1.12e-11 | - | no |
| KW | 0 | nucleotide | - | 27/200 | 4.24 | 5.47e-11 | 1.00E-07 | yes |
| KW | 0 | nucleic | - | 25/200 | 3.82 | 2.37e-09 | - | no |
| KW | 0 | nuclear | - | 16/200 | 5.21 | 1.58e-08 | - | no |
| KW | 0 | alpha | - | 25/200 | 3.43 | 2.21e-08 | - | no |
| KW | 0 | finger | - | 28/200 | 3.03 | 5.12e-08 | - | no |
| KW | 0 | ipr015943 | - | 10/200 | 6.65 | 3.87e-07 | - | yes |
| KW | 0 | ipr011046 | - | 10/200 | 6.44 | 5.29e-07 | - | yes |
| KW | 0 | factor | - | 33/200 | 1.88 | 1.36e-04 | 2.00E-17 | no |
| KW | 0 | ubiquitin | - | 13/200 | 2.89 | 1.88e-04 | - | yes |
| KW | 0 | containing | - | 31/200 | 1.86 | 2.72e-04 | 6.00E-161 | no |
| KW | 0 | ligase | - | 11/200 | 2.82 | 6.07e-04 | - | yes |
| KW | 0 | terminal | - | 33/200 | 1.71 | 7.91e-04 | - | no |
| KW | 0 | encodes | - | 40/200 | 1.57 | 1.38e-03 | - | no |
| KW | 0 | intracellular | - | 12/200 | 2.33 | 2.19e-03 | - | no |
| KW | 0 | nucleus | - | 23/200 | 1.78 | 2.53e-03 | - | no |
| KW | 0 | region | - | 25/200 | 1.73 | 2.63e-03 | - | yes |
| KW | 0 | mitochondrion | - | 12/200 | 2.19 | 3.68e-03 | - | no |
| KW | 0 | development | - | 14/200 | 2.01 | 4.60e-03 | - | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | 4.00E-22 | no |
| KW | 0 | complex | - | 16/200 | 1.89 | 5.17e-03 | 7.00E-05 | yes |
| KW | 0 | repeat | - | 22/200 | 1.69 | 5.61e-03 | 0 | yes |
| KW | 0 | cellular_component | - | 63/200 | 1.29 | 8.66e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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