OMAT4P104520http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u401045200000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P107920 | 0.924292 | - | AT2G35345 | unknown protein | - | - |
| OMAT3P010340 | 0.90514 | - | AT3G27440 | uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative | - | - |
| OMAT2P112060 | 0.9003 | - | AT2G46660 | CYP78A6 | - | - |
| OMAT2P004450 | 0.89224 | - | AT2G22910 | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein | - | - |
| OMAT5P008770 | 0.888811 | - | AT5G25520 | transcription elongation factor-related | - | - |
| OMAT2P110840 | 0.887435 | - | AT2G42560 | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | - | - |
| OMAT2P003980 | 0.887304 | - | - | - | AT2G21500 | protein binding / zinc ion binding |
| OMAT2P012550 | 0.886598 | - | AT2G44990 | CCD7 (CAROTENOID CLEAVAGE DIOXYGENASE 7) | - | - |
| OMAT1P111490 | 0.881651 | - | AT1G47340 | F-box family protein | - | - |
| OMAT4P007860 | 0.879693 | - | AT4G25200 | ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P110151 | -0.831345 | - | AT4G34720 | AVA-P1 | - | - |
| OMAT2P110810 | -0.829025 | - | AT2G42500 | PP2A-4 | - | - |
| OMAT1P102690 | -0.8124 | - | AT1G08660 | glycosyl transferase family 29 protein / sialyltransferase family protein | - | - |
| OMAT3P103770 | -0.810635 | - | AT3G11500 | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative | - | - |
| OMAT3P001390 | -0.808544 | - | AT3G04120 | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) | - | - |
| OMAT3P015290 | -0.8058 | - | AT3G55440 | TPI (TRIOSEPHOSPHATE ISOMERASE) | - | - |
| OMAT2P001450 | -0.793448 | - | AT2G07050 | CAS1 (cycloartenol synthase 1) | - | - |
| OMAT1P103890 | -0.792594 | - | AT1G12120 | unknown protein | - | - |
| OMAT3P106570 | -0.790399 | - | AT3G19820 | DWF1 (DWARF 1) | - | - |
| OMAT5P009830 | -0.781791 | - | AT5G35730 | EXS family protein / ERD1/XPR1/SYG1 family protein | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 1.00e-06 | :20 terms with high significance | |
| 1.00e-06 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0009408 | response to heat | 16/200 | 20.15 | 5.18e-18 | 6.22E-17 | no |
| B | 4 | GO:0009266 | response to temperature stimulus | 16/200 | 7.02 | 1.78e-10 | - | no |
| B | 3 | GO:0048316 | seed development | 14/200 | 5.14 | 1.21e-07 | 1.76E-19 | no |
| B | 4 | GO:0010035 | response to inorganic substance | 14/200 | 4.91 | 2.16e-07 | - | no |
| B | 5 | GO:0010154 | fruit development | 14/200 | 4.90 | 2.22e-07 | 6.68E-18 | no |
| B | 4 | GO:0006979 | response to oxidative stress | 10/200 | 6.11 | 8.89e-07 | 5.62E-17 | no |
| B | 3 | GO:0042221 | response to chemical stimulus | 29/200 | 2.54 | 1.22e-06 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 22/200 | 2.97 | 1.65e-06 | - | yes |
| B | 4 | GO:0048608 | reproductive structure development | 16/200 | 3.28 | 9.30e-06 | - | no |
| B | 4 | GO:0009793 | embryonic development ending in seed dormancy | 10/200 | 4.36 | 2.18e-05 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 11/200 | 3.83 | 3.63e-05 | 3.82E-18 | yes |
| B | 3 | GO:0003006 | reproductive developmental process | 16/200 | 2.90 | 4.33e-05 | 1.23E-18 | no |
| B | 4 | GO:0009314 | response to radiation | 11/200 | 3.70 | 4.98e-05 | 8.93E-25 | yes |
| B | 3 | GO:0009790 | embryonic development | 10/200 | 3.79 | 7.81e-05 | 1.57E-16 | no |
| B | 3 | GO:0009791 | post-embryonic development | 16/200 | 2.70 | 1.03e-04 | 5.85E-19 | no |
| B | 3 | GO:0022414 | reproductive process | 16/200 | 2.66 | 1.28e-04 | 9.77E-18 | no |
| B | 3 | GO:0006950 | response to stress | 25/200 | 2.02 | 2.89e-04 | 2.13E-16 | no |
| B | 4 | GO:0009725 | response to hormone stimulus | 12/200 | 2.54 | 1.01e-03 | - | no |
| B | 3 | GO:0048856 | anatomical structure development | 18/200 | 2.01 | 1.70e-03 | - | no |
| B | 3 | GO:0009719 | response to endogenous stimulus | 12/200 | 2.33 | 2.17e-03 | - | no |
| B | 4 | GO:0010033 | response to organic substance | 13/200 | 1.94 | 7.65e-03 | - | no |
| B | 3 | GO:0009056 | catabolic process | 10/200 | 2.10 | 8.89e-03 | - | no |
| C | 5 | GO:0005829 | cytosol | 10/200 | 2.42 | 3.16e-03 | 2.56E-19 | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 18/200 | 2.13 | 8.56e-04 | 1.56E-17 | no |
| M | 5 | GO:0046872 | metal ion binding | 22/200 | 1.62 | 9.34e-03 | - | no |
| M | 4 | GO:0043169 | cation binding | 23/200 | 1.60 | 9.41e-03 | - | no |
| M | 3 | GO:0043167 | ion binding | 23/200 | 1.60 | 9.41e-03 | 4.07E-39 | no |
| PS | 4 | PO:0006345 | pollen tube | 47/200 | 1.61 | 2.69e-04 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 51/200 | 1.57 | 2.76e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 51/200 | 1.57 | 2.76e-04 | - | no |
| PS | 3 | PO:0009006 | shoot | 132/200 | 1.22 | 2.87e-04 | 7.97E-24 | yes |
| PS | 4 | PO:0009049 | inflorescence | 128/200 | 1.22 | 3.24e-04 | 1.39E-29 | yes |
| PS | 3 | PO:0006001 | phyllome | 125/200 | 1.22 | 5.30e-04 | - | yes |
| PS | 5 | PO:0009046 | flower | 125/200 | 1.20 | 1.09e-03 | 1.10E-26 | yes |
| PS | 3 | PO:0009010 | seed | 114/200 | 1.17 | 8.99e-03 | 9.68E-68 | yes |
| PS | 4 | PO:0009026 | sporophyll | 106/200 | 1.18 | 9.54e-03 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 46/200 | 1.57 | 5.72e-04 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 126/200 | 1.20 | 9.36e-04 | 4.87E-19 | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 118/200 | 1.20 | 2.47e-03 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 120/200 | 1.18 | 4.03e-03 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 115/200 | 1.19 | 4.26e-03 | 1.03E-18 | yes |
| KW | 0 | shock | - | 13/200 | 6.93 | 7.56e-09 | 2.92E-16 | no |
| KW | 0 | dormancy | - | 11/200 | 5.81 | 5.30e-07 | 3.73E-18 | no |
| KW | 0 | ending | - | 10/200 | 5.62 | 2.02e-06 | - | no |
| KW | 0 | embryonic | - | 10/200 | 4.66 | 1.19e-05 | 2.73E-16 | no |
| KW | 0 | cytosol | - | 10/200 | 4.06 | 4.24e-05 | 2.56E-19 | no |
| KW | 0 | stage | - | 36/200 | 1.86 | 9.15e-05 | 8.35E-16 | no |
| KW | 0 | response | - | 34/200 | 1.90 | 9.73e-05 | 1.43E-55 | no |
| KW | 0 | anthesis | - | 26/200 | 1.98 | 3.02e-04 | 1.03E-18 | no |
| KW | 0 | petal | - | 28/200 | 1.92 | 3.08e-04 | - | no |
| KW | 0 | ipr013083 | - | 10/200 | 3.19 | 3.43e-04 | - | no |
| KW | 0 | expansion | - | 28/200 | 1.90 | 3.48e-04 | 1.04E-39 | no |
| KW | 0 | differentiation | - | 28/200 | 1.85 | 5.49e-04 | 8.30E-16 | no |
| KW | 0 | development | - | 16/200 | 2.29 | 6.89e-04 | 7.61E-48 | no |
| KW | 0 | molecular_function | - | 70/200 | 1.39 | 7.87e-04 | - | no |
| KW | 0 | small | - | 11/200 | 2.73 | 8.00e-04 | 1.10E-20 | no |
| KW | 0 | cellular_component | - | 67/200 | 1.37 | 1.35e-03 | - | no |
| KW | 0 | stimulus | - | 10/200 | 2.32 | 4.26e-03 | 1.58E-16 | no |
| KW | 0 | conserved | - | 23/200 | 1.70 | 4.63e-03 | 9.47E-35 | no |
| KW | 0 | class | - | 12/200 | 2.00 | 7.55e-03 | 5.06E-16 | no |
| KW | 0 | stress | - | 10/200 | 2.13 | 7.91e-03 | 7.86E-16 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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