OMAT4P108160http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u401081600000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P004300 | 0.932425 | - | AT2G22480 | PFK5 (PHOSPHOFRUCTOKINASE 5) | - | - |
| OMAT5P011320 | 0.918046 | - | AT5G41180 | leucine-rich repeat protein kinase, putative | - | - |
| OMAT5P018430 | 0.910704 | - | AT5G60570 | kelch repeat-containing F-box family protein | - | - |
| OMAT4P013290 | 0.905927 | - | AT4G38200 | guanine nucleotide exchange family protein | - | - |
| OMAT3P017750 | 0.903331 | - | AT3G62300 | agenet domain-containing protein | - | - |
| OMAT3P017480 | 0.901848 | - | AT3G61560 | reticulon family protein (RTNLB6) | - | - |
| OMAT2P012670 | 0.900482 | - | AT2G45300 | 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase | - | - |
| OMAT2P009540 | 0.898814 | - | AT2G37160,ath-MIR1886 | [AT2G37160]transducin family protein / WD-40 repeat family protein, [ath-MIR1886]ath-MIR1886 | - | - |
| OMAT5P105460 | 0.892598 | - | AT5G18620 | CHR17 (CHROMATIN REMODELING FACTOR17) | - | - |
| OMAT5P006230 | 0.891994 | - | AT5G18070 | DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P115300 | -0.802892 | - | AT1G62510 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | - | - |
| OMAT5P106710 | -0.790525 | - | AT5G23040 | CDF1 (CELL GROWTH DEFECT FACTOR 1) | - | - |
| OMAT3P013820 | -0.78819 | - | AT3G51500,AT3G51510 | [AT3G51500]unknown protein, [AT3G51510]unknown protein | - | - |
| OMAT5P113480 | -0.770951 | - | AT5G52190,AT5G52200 | [AT5G52190]sugar isomerase (SIS) domain-containing protein, [AT5G52200]unknown protein | - | - |
| OMAT4P106830 | -0.763945 | - | AT4G25130 | peptide methionine sulfoxide reductase, putative | - | - |
| OMAT5P110710 | -0.75971 | - | AT5G44000 | glutathione S-transferase C-terminal domain-containing protein | - | - |
| OMAT1P103320 | -0.758237 | - | AT1G10500 | ATCPISCA (chloroplast-localized IscA-like protein) | AT1G10490 | unknown protein |
| OMAT1P005410 | -0.757776 | - | AT1G15180 | MATE efflux family protein | - | - |
| OMAT2P109110 | -0.736461 | - | AT2G38270 | CXIP2 (CAX-INTERACTING PROTEIN 2) | - | - |
| OMAT1P100080 | -0.735598 | - | AT1G01170 | ozone-responsive stress-related protein, putative | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 2.02e-27 | :20 terms with high significance | |
| 2.02e-27 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 12/200 | 3.88 | 1.59e-05 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 17/200 | 2.56 | 1.33e-04 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 17/200 | 2.56 | 1.35e-04 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 14/200 | 2.69 | 2.58e-04 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 19/200 | 2.11 | 7.28e-04 | - | no |
| B | 4 | GO:0044283 | small molecule biosynthetic process | 10/200 | 2.20 | 6.27e-03 | - | no |
| B | 3 | GO:0006810 | transport | 18/200 | 1.76 | 7.31e-03 | - | no |
| B | 3 | GO:0051234 | establishment of localization | 18/200 | 1.75 | 7.53e-03 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 64/200 | 1.29 | 8.30e-03 | - | no |
| B | 5 | GO:0006464 | protein modification process | 18/200 | 1.73 | 8.56e-03 | - | no |
| C | 3 | GO:0016020 | membrane | 70/200 | 2.56 | 5.66e-15 | - | yes |
| C | 4 | GO:0005886 | plasma membrane | 42/200 | 3.39 | 5.68e-13 | - | yes |
| C | 3 | GO:0044464 | cell part | 135/200 | 1.48 | 1.61e-10 | - | yes |
| C | 5 | GO:0005794 | Golgi apparatus | 11/200 | 8.39 | 9.64e-09 | - | no |
| C | 3 | GO:0044425 | membrane part | 17/200 | 2.15 | 1.05e-03 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 50/200 | 1.44 | 2.36e-03 | - | yes |
| C | 4 | GO:0005737 | cytoplasm | 52/200 | 1.39 | 4.20e-03 | - | yes |
| C | 3 | GO:0043234 | protein complex | 13/200 | 1.99 | 6.37e-03 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 60/200 | 1.30 | 9.43e-03 | - | yes |
| M | 3 | GO:0016740 | transferase activity | 34/200 | 2.08 | 1.47e-05 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 20/200 | 2.18 | 3.70e-04 | - | no |
| M | 5 | GO:0016301 | kinase activity | 18/200 | 2.24 | 4.90e-04 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 14/200 | 2.26 | 1.54e-03 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 16/200 | 1.77 | 9.66e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 16/200 | 1.76 | 9.90e-03 | - | no |
| PS | 3 | PO:0009013 | meristem | 163/200 | 2.03 | 5.05e-34 | - | yes |
| PS | 3 | PO:0009005 | root | 170/200 | 1.89 | 8.20e-33 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 159/200 | 2.05 | 8.93e-33 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 162/200 | 1.99 | 1.78e-32 | - | yes |
| PS | 5 | PO:0008037 | seedling | 167/200 | 1.89 | 1.63e-31 | - | yes |
| PS | 3 | PO:0009032 | petal | 165/200 | 1.88 | 2.48e-30 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 162/200 | 1.88 | 4.32e-29 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 158/200 | 1.92 | 1.46e-28 | - | yes |
| PS | 3 | PO:0009031 | sepal | 166/200 | 1.80 | 6.46e-28 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 158/200 | 1.88 | 1.63e-27 | - | yes |
| PS | 4 | PO:0009009 | embryo | 169/200 | 1.75 | 1.75e-27 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 167/200 | 1.77 | 1.99e-27 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 167/200 | 1.77 | 1.99e-27 | - | yes |
| PS | 4 | PO:0009025 | leaf | 165/200 | 1.79 | 2.02e-27 | - | yes |
| PS | 3 | PO:0009010 | seed | 169/200 | 1.73 | 1.03e-26 | - | yes |
| PS | 4 | PO:0009001 | fruit | 169/200 | 1.72 | 2.17e-26 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 169/200 | 1.72 | 2.17e-26 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 149/200 | 1.93 | 1.09e-25 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 160/200 | 1.78 | 5.23e-25 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 170/200 | 1.66 | 1.45e-24 | - | yes |
| PS | 5 | PO:0020038 | petiole | 145/200 | 1.90 | 8.99e-24 | - | yes |
| PS | 5 | PO:0009046 | flower | 169/200 | 1.62 | 5.92e-23 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 169/200 | 1.61 | 1.36e-22 | - | yes |
| PS | 3 | PO:0009006 | shoot | 172/200 | 1.58 | 1.57e-22 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 149/200 | 1.78 | 1.71e-21 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 145/200 | 1.75 | 1.29e-19 | - | yes |
| PS | 4 | PO:0009047 | stem | 145/200 | 1.72 | 8.26e-19 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 129/200 | 1.76 | 3.91e-16 | - | yes |
| PS | 4 | PO:0006345 | pollen tube | 50/200 | 1.72 | 3.36e-05 | - | yes |
| PS | 4 | PO:0005679 | epidermis | 26/200 | 2.10 | 1.16e-04 | - | yes |
| PS | 3 | PO:0009014 | dermal tissue | 26/200 | 2.10 | 1.17e-04 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 23/200 | 2.14 | 2.05e-04 | - | yes |
| PS | 4 | PO:0000351 | guard mother cell | 23/200 | 2.13 | 2.19e-04 | - | yes |
| PS | 3 | PO:0000070 | meristemoid | 23/200 | 2.12 | 2.24e-04 | - | yes |
| PS | 5 | PO:0006016 | leaf epidermis | 23/200 | 2.07 | 3.32e-04 | - | yes |
| PS | 5 | PO:0006035 | shoot epidermis | 23/200 | 2.05 | 3.67e-04 | - | yes |
| PS | 3 | PO:0004013 | epidermal cell | 24/200 | 2.01 | 3.82e-04 | - | yes |
| PS | 5 | PO:0000349 | epidermal initial | 23/200 | 2.04 | 4.06e-04 | - | yes |
| PS | 4 | PO:0004011 | initial cell | 23/200 | 2.03 | 4.44e-04 | - | yes |
| PS | 3 | PO:0004010 | meristematic cell | 23/200 | 2.02 | 4.54e-04 | - | yes |
| PS | 3 | PO:0000084 | sperm cell | 47/200 | 1.45 | 2.84e-03 | - | yes |
| PS | 3 | PO:0020097 | generative cell | 47/200 | 1.45 | 2.84e-03 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 160/200 | 2.01 | 3.53e-32 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 162/200 | 1.97 | 6.30e-32 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 162/200 | 1.97 | 1.08e-31 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 161/200 | 1.94 | 1.90e-30 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 166/200 | 1.84 | 1.82e-29 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 166/200 | 1.84 | 3.36e-29 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 173/200 | 1.70 | 2.59e-27 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 150/200 | 1.95 | 1.32e-26 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 150/200 | 1.95 | 1.41e-26 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 169/200 | 1.71 | 3.75e-26 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 173/200 | 1.65 | 1.53e-25 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 166/200 | 1.71 | 5.44e-25 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 152/200 | 1.79 | 7.00e-23 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 151/200 | 1.79 | 1.34e-22 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 151/200 | 1.79 | 1.38e-22 | - | yes |
| PG | 5 | PO:0007605 | androecium developmental stages | 49/200 | 1.67 | 7.86e-05 | - | yes |
| KW | 0 | membrane | - | 73/200 | 2.74 | 2.38e-17 | - | yes |
| KW | 0 | plasma | - | 40/200 | 3.49 | 8.41e-13 | - | yes |
| KW | 0 | golgi | - | 12/200 | 7.23 | 1.49e-08 | - | no |
| KW | 0 | amino | - | 23/200 | 2.67 | 6.12e-06 | - | no |
| KW | 0 | biosynthetic | - | 18/200 | 2.52 | 1.11e-04 | - | no |
| KW | 0 | groups | - | 11/200 | 3.37 | 1.21e-04 | - | no |
| KW | 0 | transferring | - | 11/200 | 3.30 | 1.46e-04 | - | no |
| KW | 0 | active | - | 19/200 | 2.32 | 2.24e-04 | - | no |
| KW | 0 | ipr011009 | - | 16/200 | 2.47 | 2.92e-04 | - | no |
| KW | 0 | kinase | - | 22/200 | 2.08 | 3.89e-04 | - | no |
| KW | 0 | ipr008271 | - | 13/200 | 2.66 | 4.34e-04 | - | no |
| KW | 0 | transferase | - | 15/200 | 2.45 | 4.81e-04 | - | no |
| KW | 0 | phosphorylation | - | 15/200 | 2.44 | 4.91e-04 | - | no |
| KW | 0 | ipr000719 | - | 15/200 | 2.41 | 5.69e-04 | - | no |
| KW | 0 | threonine | - | 17/200 | 2.27 | 5.72e-04 | - | no |
| KW | 0 | function | - | 28/200 | 1.80 | 8.94e-04 | - | no |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | ipr017441 | - | 11/200 | 2.56 | 1.37e-03 | - | no |
| KW | 0 | serine | - | 18/200 | 2.02 | 1.63e-03 | - | no |
| KW | 0 | process | - | 33/200 | 1.61 | 2.21e-03 | - | no |
| KW | 0 | putative | - | 36/200 | 1.56 | 2.55e-03 | - | no |
| KW | 0 | ipr017442 | - | 12/200 | 2.28 | 2.62e-03 | - | no |
| KW | 0 | transport | - | 18/200 | 1.85 | 4.26e-03 | - | no |
| KW | 0 | terminal | - | 29/200 | 1.50 | 9.96e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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