OMAT5P002230http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u500022300000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P007560 | 0.980636 | - | AT3G20000 | TOM40 | - | - |
| OMAT5P106790 | 0.975357 | - | AT5G23300 | PYRD (pyrimidine d) | - | - |
| OMAT4P107360 | 0.97416 | - | AT4G26780 | AR192 | - | - |
| OMAT4P110310 | 0.973758 | - | AT4G35050 | MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3) | - | - |
| OMAT5P100370 | 0.973446 | - | AT5G02050 | mitochondrial glycoprotein family protein / MAM33 family protein | - | - |
| OMAT3P009110 | 0.973074 | - | AT3G23990 | HSP60 (HEAT SHOCK PROTEIN 60) | - | - |
| OMAT4P012520 | 0.972002 | - | AT4G36580 | AAA-type ATPase family protein | - | - |
| OMAT2P003600 | 0.971868 | - | AT2G20530 | ATPHB6 (PROHIBITIN 6) | - | - |
| OMAT4P011990 | 0.971538 | - | AT4G34910 | DEAD/DEAH box helicase, putative (RH16) | - | - |
| OMAT1P015000 | 0.969912 | - | AT1G54030 | GDSL-motif lipase, putative | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT4P102930 | -0.746186 | - | AT4G13460 | SUVH9 | - | - |
| OMAT4P104230 | -0.73541 | - | AT4G17170 | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) | - | - |
| OMAT1P023540 | -0.734689 | - | AT1G79040 | PSBR (photosystem II subunit R) | - | - |
| OMAT5P108800 | -0.734074 | - | AT5G36160 | aminotransferase-related | - | - |
| OMAT4P107010 | -0.733382 | - | AT4G25650 | ACD1-LIKE (ACD1-LIKE) | - | - |
| OMAT2P107590 | -0.719837 | - | AT2G34420 | LHB1B2 | - | - |
| OMAT1P007540 | -0.71903 | - | AT1G20620 | CAT3 (CATALASE 3) | - | - |
| OMAT5P019570 | -0.717352 | - | AT5G63800 | MUM2 (MUCILAGE-MODIFIED 2) | - | - |
| OMAT3P100900 | -0.710554 | - | AT3G03150 | unknown protein | - | - |
| OMAT1P108460 | -0.707628 | - | AT1G27100 | FUNCTIONS IN: molecular_function unknown | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 5.14e-19 | :20 terms with high significance | |
| 5.14e-19 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0042254 | ribosome biogenesis | 14/200 | 10.93 | 3.94e-12 | - | no |
| B | 3 | GO:0022613 | ribonucleoprotein complex biogenesis | 14/200 | 10.58 | 6.27e-12 | - | no |
| B | 5 | GO:0006396 | RNA processing | 16/200 | 7.23 | 1.13e-10 | - | no |
| B | 5 | GO:0006412 | translation | 24/200 | 3.31 | 7.99e-08 | - | no |
| B | 4 | GO:0010467 | gene expression | 43/200 | 2.11 | 6.87e-07 | - | no |
| B | 5 | GO:0016070 | RNA metabolic process | 21/200 | 2.47 | 4.69e-05 | - | no |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 55/200 | 1.56 | 1.83e-04 | - | no |
| B | 3 | GO:0043170 | macromolecule metabolic process | 58/200 | 1.50 | 3.55e-04 | - | no |
| B | 3 | GO:0006996 | organelle organization | 10/200 | 3.00 | 5.80e-04 | - | no |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 25/200 | 1.66 | 4.44e-03 | - | no |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 27/200 | 1.60 | 5.58e-03 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 62/200 | 1.31 | 6.55e-03 | - | no |
| B | 5 | GO:0044267 | cellular protein metabolic process | 31/200 | 1.52 | 6.93e-03 | - | no |
| B | 4 | GO:0019538 | protein metabolic process | 34/200 | 1.47 | 7.97e-03 | - | no |
| C | 3 | GO:0043228 | non-membrane-bounded organelle | 41/200 | 6.88 | 1.21e-23 | - | no |
| C | 4 | GO:0043232 | intracellular non-membrane-bounded organelle | 41/200 | 6.88 | 1.21e-23 | - | no |
| C | 4 | GO:0070013 | intracellular organelle lumen | 28/200 | 10.32 | 2.40e-21 | - | no |
| C | 3 | GO:0043233 | organelle lumen | 28/200 | 10.30 | 2.56e-21 | - | no |
| C | 5 | GO:0005730 | nucleolus | 23/200 | 13.42 | 1.55e-20 | - | no |
| C | 5 | GO:0031981 | nuclear lumen | 24/200 | 9.93 | 3.57e-18 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 36/200 | 5.63 | 5.17e-18 | 3.64E-21 | no |
| C | 3 | GO:0005622 | intracellular | 108/200 | 2.03 | 5.78e-17 | - | no |
| C | 3 | GO:0044424 | intracellular part | 105/200 | 2.06 | 8.01e-17 | - | no |
| C | 3 | GO:0043229 | intracellular organelle | 98/200 | 2.12 | 2.95e-16 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 50/200 | 3.49 | 8.25e-16 | - | no |
| C | 3 | GO:0044422 | organelle part | 50/200 | 3.48 | 8.54e-16 | - | no |
| C | 4 | GO:0044428 | nuclear part | 24/200 | 7.22 | 5.90e-15 | - | no |
| C | 3 | GO:0030529 | ribonucleoprotein complex | 24/200 | 6.88 | 1.74e-14 | - | no |
| C | 4 | GO:0005840 | ribosome | 19/200 | 7.42 | 1.78e-12 | - | no |
| C | 4 | GO:0005737 | cytoplasm | 79/200 | 2.11 | 2.01e-12 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 87/200 | 1.98 | 2.86e-12 | - | no |
| C | 3 | GO:0043227 | membrane-bounded organelle | 87/200 | 1.98 | 2.89e-12 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 75/200 | 2.16 | 3.05e-12 | - | no |
| C | 4 | GO:0033279 | ribosomal subunit | 14/200 | 8.62 | 1.14e-10 | - | no |
| C | 5 | GO:0015934 | large ribosomal subunit | 11/200 | 11.95 | 1.69e-10 | - | no |
| C | 4 | GO:0044429 | mitochondrial part | 12/200 | 8.60 | 1.85e-09 | - | no |
| C | 5 | GO:0022626 | cytosolic ribosome | 13/200 | 7.06 | 5.91e-09 | - | no |
| C | 5 | GO:0005829 | cytosol | 15/200 | 3.63 | 4.75e-06 | - | no |
| C | 5 | GO:0005634 | nucleus | 33/200 | 2.11 | 1.43e-05 | - | no |
| C | 3 | GO:0044464 | cell part | 120/200 | 1.31 | 1.86e-05 | - | no |
| C | 3 | GO:0031090 | organelle membrane | 10/200 | 3.43 | 1.86e-04 | - | no |
| C | 3 | GO:0043234 | protein complex | 13/200 | 1.99 | 6.37e-03 | - | no |
| M | 3 | GO:0003735 | structural constituent of ribosome | 18/200 | 8.31 | 8.47e-13 | - | no |
| M | 4 | GO:0003723 | RNA binding | 21/200 | 3.03 | 2.02e-06 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 23/200 | 1.74 | 3.40e-03 | - | no |
| M | 3 | GO:0003676 | nucleic acid binding | 36/200 | 1.52 | 4.00e-03 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 10/200 | 2.25 | 5.42e-03 | - | no |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 10/200 | 2.23 | 5.81e-03 | - | no |
| M | 3 | GO:0016787 | hydrolase activity | 25/200 | 1.60 | 7.24e-03 | - | no |
| PS | 4 | PO:0000037 | shoot apex | 156/200 | 1.81 | 1.00e-24 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 149/200 | 1.83 | 4.75e-23 | - | no |
| PS | 5 | PO:0020038 | petiole | 142/200 | 1.87 | 7.06e-22 | - | no |
| PS | 3 | PO:0009005 | root | 154/200 | 1.71 | 5.06e-21 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 144/200 | 1.72 | 1.61e-18 | - | no |
| PS | 3 | PO:0009031 | sepal | 152/200 | 1.65 | 1.74e-18 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 142/200 | 1.72 | 3.50e-18 | - | no |
| PS | 3 | PO:0009032 | petal | 147/200 | 1.68 | 3.74e-18 | - | no |
| PS | 5 | PO:0000013 | cauline leaf | 136/200 | 1.76 | 9.74e-18 | - | no |
| PS | 4 | PO:0009025 | leaf | 150/200 | 1.63 | 1.47e-17 | - | no |
| PS | 5 | PO:0008037 | seedling | 146/200 | 1.65 | 2.91e-17 | - | no |
| PS | 5 | PO:0008034 | leaf whorl | 151/200 | 1.60 | 6.57e-17 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 151/200 | 1.60 | 6.57e-17 | - | yes |
| PS | 4 | PO:0009009 | embryo | 153/200 | 1.58 | 7.63e-17 | - | yes |
| PS | 3 | PO:0009010 | seed | 154/200 | 1.57 | 8.56e-17 | - | yes |
| PS | 4 | PO:0009001 | fruit | 154/200 | 1.57 | 1.54e-16 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 154/200 | 1.57 | 1.54e-16 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 146/200 | 1.62 | 2.29e-16 | - | no |
| PS | 5 | PO:0009027 | megasporophyll | 139/200 | 1.66 | 9.19e-16 | - | no |
| PS | 4 | PO:0009047 | stem | 139/200 | 1.65 | 1.47e-15 | - | no |
| PS | 3 | PO:0006001 | phyllome | 154/200 | 1.50 | 1.62e-14 | - | yes |
| PS | 5 | PO:0009046 | flower | 154/200 | 1.48 | 7.71e-14 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 154/200 | 1.47 | 1.47e-13 | - | yes |
| PS | 3 | PO:0009006 | shoot | 156/200 | 1.44 | 7.63e-13 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 122/200 | 1.66 | 8.79e-13 | - | no |
| PS | 3 | PO:0009013 | meristem | 124/200 | 1.54 | 1.42e-10 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 121/200 | 1.56 | 1.80e-10 | - | no |
| PS | 3 | PO:0000084 | sperm cell | 49/200 | 1.51 | 9.30e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 49/200 | 1.51 | 9.30e-04 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 104/200 | 1.25 | 1.03e-03 | - | no |
| PG | 5 | PO:0001081 | F mature embryo stage | 150/200 | 1.89 | 7.77e-25 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 153/200 | 1.84 | 1.27e-24 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 152/200 | 1.85 | 2.37e-24 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 149/200 | 1.82 | 1.38e-22 | - | no |
| PG | 4 | PO:0007631 | embryo development stages | 153/200 | 1.70 | 2.31e-20 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 153/200 | 1.69 | 3.85e-20 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 146/200 | 1.74 | 1.59e-19 | - | no |
| PG | 4 | PO:0007112 | 1 main shoot growth | 146/200 | 1.74 | 1.63e-19 | - | no |
| PG | 3 | PO:0007134 | A vegetative growth | 146/200 | 1.72 | 3.45e-19 | - | no |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 138/200 | 1.79 | 4.86e-19 | - | no |
| PG | 3 | PO:0001050 | leaf development stages | 138/200 | 1.79 | 5.14e-19 | - | no |
| PG | 5 | PO:0007604 | corolla developmental stages | 154/200 | 1.56 | 2.38e-16 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 156/200 | 1.53 | 6.67e-16 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 151/200 | 1.56 | 1.40e-15 | - | no |
| PG | 3 | PO:0007615 | flower development stages | 156/200 | 1.49 | 1.50e-14 | - | yes |
| KW | 0 | nucleolus | - | 20/200 | 14.71 | 5.56e-19 | - | no |
| KW | 0 | ribosomal | - | 26/200 | 8.61 | 5.93e-18 | - | no |
| KW | 0 | ribosome | - | 24/200 | 9.09 | 2.85e-17 | - | no |
| KW | 0 | mitochondrion | - | 30/200 | 5.47 | 6.39e-15 | 3.64E-21 | no |
| KW | 0 | mitochondrial | - | 17/200 | 7.54 | 1.67e-11 | 0 | yes |
| KW | 0 | processing | - | 14/200 | 9.86 | 1.71e-11 | - | no |
| KW | 0 | translation | - | 24/200 | 4.84 | 3.76e-11 | - | no |
| KW | 0 | constituent | - | 18/200 | 6.42 | 7.34e-11 | - | no |
| KW | 0 | structural | - | 18/200 | 5.13 | 3.03e-09 | - | no |
| KW | 0 | large | - | 11/200 | 7.17 | 5.46e-08 | - | no |
| KW | 0 | subunit | - | 24/200 | 3.27 | 9.79e-08 | - | no |
| KW | 0 | cytosolic | - | 12/200 | 5.60 | 2.85e-07 | - | no |
| KW | 0 | eukaryotic | - | 11/200 | 5.59 | 7.85e-07 | - | no |
| KW | 0 | motif | - | 16/200 | 3.29 | 8.86e-06 | - | no |
| KW | 0 | nucleotide | - | 18/200 | 2.83 | 2.38e-05 | - | no |
| KW | 0 | complex | - | 20/200 | 2.36 | 1.27e-04 | - | no |
| KW | 0 | ipr002885 | - | 10/200 | 3.57 | 1.32e-04 | - | no |
| KW | 0 | pentatricopeptide | - | 10/200 | 3.44 | 1.80e-04 | - | no |
| KW | 0 | nucleic | - | 15/200 | 2.29 | 9.44e-04 | - | no |
| KW | 0 | conserved | - | 24/200 | 1.77 | 2.27e-03 | - | no |
| KW | 0 | intracellular | - | 11/200 | 2.13 | 6.01e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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