Other supporting information

Gene Model

Correlation Plot

Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.

Positively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
OMAT4P000540	0.997078	-	-	-	-	-
OMAT4P006820	0.997073	-	AtsnoR109	AtsnoR109	-	-
OMAT2P111550	0.996871	-	AT2G44798	other RNA	-	-
OMAT1P016400	0.996613	-	AT1G60090	BGLU4 (BETA GLUCOSIDASE 4)	-	-
OMAT4P111050	0.996211	-	AT4G36880	CP1 (CYSTEINE PROTEINASE1)	-	-
OMAT1P023230	0.995928	-	Ath-127bsnoR76,AT1G78206,ath-MIR775	[Ath-127bsnoR76]Ath-127bsnoR76, [AT1G78206]MIR775a, [ath-MIR775]ath-MIR775	-	-
OMAT2P109940	0.995831	-	AT2G40220	ABI4 (ABA INSENSITIVE 4)	-	-
OMAT5P001690	0.99582	-	AT5G05290	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	-	-
OMAT5P101620	0.995803	-	-	-	-	-
OMAT1P109180	0.995798	-	AT1G29080	peptidase C1A papain family protein	-	-
Negatively Correlated Genes
Gens	PCC	Definition	Overlap gene	Definition	Overlap gene(antisense)	Definition
OMAT3P112910	-0.631015	-	AT3G53990	universal stress protein (USP) family protein	-	-
OMAT1P007540	-0.630913	-	AT1G20620	CAT3 (CATALASE 3)	-	-
OMAT2P100290	-0.622467	-	AT2G01690	binding	-	-
OMAT2P002180	-0.611272	-	AT2G16050	FUNCTIONS IN: molecular_function unknown	-	-
OMAT3P002110	-0.602632	-	AT3G06110	MKP2 (MAPK PHOSPHATASE 2)	-	-
OMAT5P019730	-0.596245	-	AT5G64240	AtMC3 (metacaspase 3)	-	-
OMAT4P101420	-0.589904	-	AT4G05050	UBQ11 (UBIQUITIN 11)	-	-
OMAT4P102930	-0.576442	-	AT4G13460	SUVH9	-	-
OMAT4P104230	-0.574407	-	AT4G17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	-	-
OMAT1P110670	-0.567206	-	AT1G34220	unknown protein	-	-

Get whole results

Over-Representation Analysis Result

	p-value	<= 6.30e-09	:20 terms with high significance
6.30e-09 <	p-value	<= 8.76e-06	:With considering multiple testing correction; p <= 1.00e-02 / 1142
8.76e-06 <	p-value	<= 1.00e-02

Type of term (*1)	Depth of the term in ontology tree	ID/Term	Description	Number of genes	Over-Representative rate (*2)	p-value (*3)	PosMed p-value (*4) (Link to PosMed)	Found on gene annotation
B	4	GO:0042254	ribosome biogenesis	23/200	17.95	1.46e-23	-	no
B	3	GO:0022613	ribonucleoprotein complex biogenesis	23/200	17.38	3.20e-23	-	no
B	5	GO:0006364	rRNA processing	18/200	28.78	5.12e-23	-	no
B	5	GO:0009451	RNA modification	19/200	25.07	7.09e-23	-	no
B	5	GO:0006396	RNA processing	23/200	10.39	5.89e-18	-	no
B	4	GO:0010467	gene expression	46/200	2.26	3.56e-08	-	no
B	5	GO:0016070	RNA metabolic process	25/200	2.94	4.36e-07	-	no
B	3	GO:0043170	macromolecule metabolic process	63/200	1.63	1.39e-05	-	no
B	5	GO:0006412	translation	19/200	2.62	4.42e-05	-	no
B	5	GO:0090304	nucleic acid metabolic process	30/200	2.00	9.62e-05	-	no
B	4	GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	31/200	1.84	3.37e-04	-	no
B	4	GO:0044260	cellular macromolecule metabolic process	53/200	1.50	6.18e-04	-	no
B	3	GO:0044238	primary metabolic process	69/200	1.39	7.71e-04	-	yes
B	5	GO:0006508	proteolysis	11/200	2.62	1.12e-03	-	no
B	4	GO:0043412	macromolecule modification	21/200	1.85	2.31e-03	-	no
B	4	GO:0034641	cellular nitrogen compound metabolic process	31/200	1.59	3.46e-03	-	no
B	3	GO:0006807	nitrogen compound metabolic process	31/200	1.56	4.64e-03	-	no

C	3	GO:0030529	ribonucleoprotein complex	37/200	10.61	4.07e-28	-	no
C	3	GO:0043228	non-membrane-bounded organelle	29/200	4.87	3.60e-13	-	no
C	4	GO:0043232	intracellular non-membrane-bounded organelle	29/200	4.87	3.60e-13	-	no
C	4	GO:0033279	ribosomal subunit	16/200	9.85	8.49e-13	-	no
C	4	GO:0005840	ribosome	19/200	7.42	1.78e-12	-	no
C	5	GO:0022626	cytosolic ribosome	15/200	8.15	6.60e-11	-	no
C	5	GO:0015934	large ribosomal subunit	10/200	10.87	2.50e-09	-	no
C	5	GO:0044445	cytosolic part	12/200	8.01	4.35e-09	-	no
C	3	GO:0044446	intracellular organelle part	35/200	2.44	2.76e-07	-	no
C	3	GO:0044422	organelle part	35/200	2.44	2.81e-07	-	no
C	5	GO:0005730	nucleolus	10/200	5.83	1.40e-06	-	no
C	4	GO:0070013	intracellular organelle lumen	11/200	4.06	2.06e-05	-	no
C	3	GO:0043233	organelle lumen	11/200	4.05	2.11e-05	-	no
C	3	GO:0044424	intracellular part	76/200	1.49	3.32e-05	-	no
C	5	GO:0031981	nuclear lumen	10/200	4.14	3.55e-05	-	no
C	3	GO:0005622	intracellular	78/200	1.47	4.68e-05	-	no
C	5	GO:0005829	cytosol	13/200	3.14	7.99e-05	-	no
C	4	GO:0044428	nuclear part	10/200	3.01	5.63e-04	-	no
C	3	GO:0043229	intracellular organelle	60/200	1.30	9.43e-03	-	no

M	3	GO:0003735	structural constituent of ribosome	19/200	8.78	7.94e-14	-	no

KW	0	ribosomal	-	23/200	7.62	6.28e-15	-	no
KW	0	ribosome	-	21/200	7.95	3.48e-14	-	no
KW	0	constituent	-	19/200	6.78	9.04e-12	-	no
KW	0	structural	-	19/200	5.42	4.71e-10	-	no
KW	0	cytosolic	-	15/200	7.01	6.06e-10	-	no
KW	0	translation	-	21/200	4.24	6.30e-09	-	no
KW	0	large	-	10/200	6.52	4.71e-07	-	no
KW	0	subunit	-	22/200	3.00	1.38e-06	-	no
KW	0	proteolysis	-	10/200	4.09	3.97e-05	-	no
KW	0	peptidase	-	11/200	2.76	7.21e-04	-	no
KW	0	intracellular	-	11/200	2.13	6.01e-03	-	no

(*1)	[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.
(*2)	([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)	P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)	PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.

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