OMAT5P105150http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501051500000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P004380 | 0.941895 | - | AT2G22680 | zinc finger (C3HC4-type RING finger) family protein | - | - |
| OMAT5P101570 | 0.901232 | - | AT5G05980 | ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B) | - | - |
| OMAT2P010490 | 0.89813 | - | AT2G39705 | RTFL8 (ROTUNDIFOLIA LIKE 8) | - | - |
| OMAT2P102090 | 0.89507 | - | AT2G16640 | TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132) | - | - |
| OMAT5P112700 | 0.894313 | - | - | - | AT5G49640 | unknown protein |
| OMAT3P007960 | 0.880133 | - | AT3G20898 | unknown protein | AT3G20900 | unknown protein |
| OMAT1P115380 | 0.873834 | - | AT1G62810 | copper amine oxidase, putative | - | - |
| OMAT1P108130 | 0.864757 | - | AT1G25580 | ANAC008 (Arabidopsis NAC domain containing protein 8) | - | - |
| OMAT3P100970 | 0.862047 | - | AT3G03300 | DCL2 (DICER-LIKE 2) | - | - |
| OMAT1P009840 | 0.855825 | - | AT1G27590,AT1G27595 | [AT1G27590]FUNCTIONS IN: molecular_function unknown, [AT1G27595]EXPRESSED IN: 22 plant structures | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT2P002950 | -0.670659 | - | - | - | AT2G18540 | cupin family protein |
| OMAT1P112880 | -0.670386 | - | AT1G52510 | hydrolase, alpha/beta fold family protein | AT1G52500 | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) |
| OMAT4P105780 | -0.668339 | - | AT4G22290 | ubiquitin thiolesterase | - | - |
| OMAT1P009400 | -0.656714 | - | AT1G26560 | BGLU40 (BETA GLUCOSIDASE 40) | - | - |
| OMAT1P104135 | -0.65001 | - | AT1G12845 | unknown protein | - | - |
| OMAT2P013445 | -0.646125 | - | AT2G46910 | plastid-lipid associated protein PAP / fibrillin family protein | - | - |
| OMAT4P013110 | -0.635032 | - | AT4G37760 | SQE3 (squalene epoxidase 3) | - | - |
| OMAT1P011010 | -0.626107 | - | - | - | AT1G31330 | PSAF (photosystem I subunit F) |
| OMAT1P111200 | -0.620299 | - | AT1G44191 | Encodes a ECA1 gametogenesis related family protein | - | - |
| OMAT3P009775 | -0.61642 | - | AT3G26060 | ATPRX Q | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.17e-20 | :20 terms with high significance | |
| 3.17e-20 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0048519 | negative regulation of biological process | 10/200 | 4.56 | 1.47e-05 | - | yes |
| B | 3 | GO:0050794 | regulation of cellular process | 32/200 | 2.10 | 2.18e-05 | 2.58E-17 | yes |
| B | 3 | GO:0050789 | regulation of biological process | 34/200 | 1.97 | 4.74e-05 | 2.60E-17 | yes |
| B | 4 | GO:0080090 | regulation of primary metabolic process | 24/200 | 2.28 | 5.63e-05 | - | yes |
| B | 4 | GO:0009889 | regulation of biosynthetic process | 23/200 | 2.29 | 7.25e-05 | 6.75E-12 | yes |
| B | 5 | GO:0031326 | regulation of cellular biosynthetic process | 23/200 | 2.29 | 7.25e-05 | 6.75E-12 | yes |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 24/200 | 2.22 | 8.58e-05 | - | yes |
| B | 4 | GO:0060255 | regulation of macromolecule metabolic process | 24/200 | 2.19 | 1.04e-04 | - | yes |
| B | 3 | GO:0019222 | regulation of metabolic process | 25/200 | 2.12 | 1.29e-04 | - | yes |
| B | 5 | GO:0010556 | regulation of macromolecule biosynthetic process | 22/200 | 2.23 | 1.45e-04 | - | yes |
| B | 5 | GO:0010468 | regulation of gene expression | 23/200 | 2.16 | 1.78e-04 | 1.64E-18 | yes |
| B | 4 | GO:0051171 | regulation of nitrogen compound metabolic process | 21/200 | 2.07 | 5.45e-04 | - | yes |
| B | 5 | GO:0090304 | nucleic acid metabolic process | 27/200 | 1.80 | 1.07e-03 | - | yes |
| B | 5 | GO:0019219 | regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 20/200 | 1.99 | 1.15e-03 | - | yes |
| B | 5 | GO:0006350 | transcription | 20/200 | 1.96 | 1.44e-03 | 1.64E-18 | yes |
| B | 4 | GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 28/200 | 1.66 | 2.92e-03 | - | yes |
| B | 4 | GO:0044260 | cellular macromolecule metabolic process | 50/200 | 1.42 | 3.22e-03 | - | yes |
| B | 3 | GO:0043170 | macromolecule metabolic process | 53/200 | 1.37 | 5.16e-03 | - | yes |
| B | 4 | GO:0006952 | defense response | 10/200 | 2.20 | 6.39e-03 | 3.45E-17 | no |
| B | 3 | GO:0044237 | cellular metabolic process | 62/200 | 1.31 | 6.55e-03 | - | yes |
| B | 3 | GO:0006807 | nitrogen compound metabolic process | 30/200 | 1.51 | 8.35e-03 | - | yes |
| B | 5 | GO:0006464 | protein modification process | 18/200 | 1.73 | 8.56e-03 | 7.84E-18 | no |
| C | 5 | GO:0005634 | nucleus | 34/200 | 2.17 | 5.61e-06 | 3.64E-21 | yes |
| C | 4 | GO:0044428 | nuclear part | 13/200 | 3.91 | 7.36e-06 | 4.90E-17 | yes |
| C | 4 | GO:0005886 | plasma membrane | 26/200 | 2.10 | 1.17e-04 | 1.44E-15 | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 62/200 | 1.41 | 1.10e-03 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 62/200 | 1.41 | 1.10e-03 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 63/200 | 1.36 | 2.39e-03 | - | yes |
| C | 3 | GO:0005622 | intracellular | 70/200 | 1.32 | 3.44e-03 | 8.12E-16 | yes |
| C | 3 | GO:0016020 | membrane | 40/200 | 1.46 | 4.98e-03 | 1.96E-15 | no |
| C | 3 | GO:0044424 | intracellular part | 66/200 | 1.30 | 6.79e-03 | 1.44E-15 | yes |
| M | 3 | GO:0003676 | nucleic acid binding | 40/200 | 1.69 | 3.17e-04 | 1.12E-16 | yes |
| M | 3 | GO:0003700 | transcription factor activity | 20/200 | 1.98 | 1.26e-03 | 1.66E-16 | no |
| M | 4 | GO:0003677 | DNA binding | 24/200 | 1.73 | 3.06e-03 | 1.64E-18 | yes |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 17/200 | 1.88 | 4.43e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 17/200 | 1.88 | 4.43e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 17/200 | 1.87 | 4.55e-03 | - | no |
| M | 3 | GO:0005515 | protein binding | 25/200 | 1.60 | 7.41e-03 | 1.64E-18 | yes |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 17/200 | 1.73 | 9.93e-03 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 17/200 | 1.73 | 9.93e-03 | - | no |
| PS | 4 | PO:0000230 | inflorescence meristem | 161/200 | 2.07 | 2.09e-34 | 7.38E-19 | yes |
| PS | 3 | PO:0009013 | meristem | 163/200 | 2.03 | 5.05e-34 | 1.64E-18 | yes |
| PS | 3 | PO:0009005 | root | 165/200 | 1.83 | 1.00e-28 | 1.43E-16 | yes |
| PS | 4 | PO:0009047 | stem | 157/200 | 1.86 | 1.61e-26 | 4.71E-16 | yes |
| PS | 5 | PO:0008037 | seedling | 158/200 | 1.79 | 1.06e-24 | 1.16E-17 | yes |
| PS | 3 | PO:0009010 | seed | 164/200 | 1.68 | 4.79e-23 | 1.64E-18 | yes |
| PS | 4 | PO:0009001 | fruit | 164/200 | 1.67 | 9.55e-23 | 5.45E-17 | yes |
| PS | 3 | PO:0006342 | infructescence | 164/200 | 1.67 | 9.55e-23 | - | yes |
| PS | 4 | PO:0009009 | embryo | 162/200 | 1.68 | 2.20e-22 | 2.90E-16 | yes |
| PS | 5 | PO:0000013 | cauline leaf | 142/200 | 1.84 | 3.48e-21 | 1.44E-15 | yes |
| PS | 5 | PO:0020039 | leaf lamina | 147/200 | 1.78 | 4.14e-21 | - | yes |
| PS | 3 | PO:0009006 | shoot | 170/200 | 1.57 | 4.23e-21 | 1.64E-18 | yes |
| PS | 3 | PO:0009031 | sepal | 156/200 | 1.69 | 6.46e-21 | 1.44E-15 | yes |
| PS | 4 | PO:0009025 | leaf | 155/200 | 1.69 | 1.59e-20 | 1.64E-18 | yes |
| PS | 4 | PO:0009049 | inflorescence | 166/200 | 1.59 | 1.59e-20 | 1.64E-18 | yes |
| PS | 5 | PO:0009046 | flower | 165/200 | 1.59 | 3.32e-20 | 0 | yes |
| PS | 4 | PO:0020030 | cotyledon | 136/200 | 1.85 | 6.00e-20 | 1.44E-15 | yes |
| PS | 3 | PO:0009032 | petal | 150/200 | 1.71 | 6.64e-20 | 1.64E-18 | yes |
| PS | 5 | PO:0008034 | leaf whorl | 156/200 | 1.65 | 7.84e-20 | 1.44E-15 | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 156/200 | 1.65 | 7.84e-20 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 163/200 | 1.59 | 1.03e-19 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 146/200 | 1.74 | 1.13e-19 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 143/200 | 1.76 | 2.23e-19 | 1.44E-15 | yes |
| PS | 4 | PO:0009026 | sporophyll | 151/200 | 1.68 | 3.50e-19 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 145/200 | 1.73 | 4.92e-19 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 146/200 | 1.70 | 1.88e-18 | 1.64E-18 | yes |
| PS | 5 | PO:0020038 | petiole | 128/200 | 1.68 | 3.01e-14 | 1.64E-18 | yes |
| PS | 3 | PO:0020091 | male gametophyte | 133/200 | 1.60 | 2.48e-13 | 1.44E-15 | yes |
| PS | 3 | PO:0000084 | sperm cell | 50/200 | 1.54 | 5.13e-04 | - | no |
| PS | 3 | PO:0020097 | generative cell | 50/200 | 1.54 | 5.13e-04 | - | no |
| PS | 4 | PO:0000293 | guard cell | 21/200 | 1.95 | 1.20e-03 | 2.21E-18 | no |
| PS | 4 | PO:0000351 | guard mother cell | 21/200 | 1.94 | 1.27e-03 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 21/200 | 1.94 | 1.29e-03 | - | no |
| PS | 4 | PO:0005679 | epidermis | 23/200 | 1.86 | 1.48e-03 | 7.47E-17 | no |
| PS | 3 | PO:0009014 | dermal tissue | 23/200 | 1.86 | 1.49e-03 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 21/200 | 1.89 | 1.81e-03 | 1.64E-18 | no |
| PS | 5 | PO:0006035 | shoot epidermis | 21/200 | 1.88 | 1.98e-03 | 1.44E-15 | no |
| PS | 5 | PO:0000349 | epidermal initial | 21/200 | 1.86 | 2.15e-03 | - | no |
| PS | 4 | PO:0004011 | initial cell | 21/200 | 1.85 | 2.33e-03 | 2.07E-16 | no |
| PS | 3 | PO:0004010 | meristematic cell | 21/200 | 1.85 | 2.37e-03 | 1.44E-15 | no |
| PS | 3 | PO:0004013 | epidermal cell | 21/200 | 1.76 | 4.21e-03 | 1.44E-15 | no |
| PG | 5 | PO:0007133 | leaf production | 150/200 | 1.78 | 5.82e-22 | 4.07E-18 | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 150/200 | 1.78 | 5.97e-22 | 1.34E-11 | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 150/200 | 1.77 | 1.32e-21 | 1.64E-18 | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 162/200 | 1.64 | 3.51e-21 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 159/200 | 1.64 | 3.17e-20 | 1.44E-15 | yes |
| PG | 4 | PO:0007631 | embryo development stages | 152/200 | 1.69 | 9.40e-20 | 6.75E-12 | yes |
| PG | 3 | PO:0001170 | seed development stages | 152/200 | 1.68 | 1.55e-19 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 162/200 | 1.59 | 1.93e-19 | 1.44E-15 | yes |
| PG | 3 | PO:0007615 | flower development stages | 164/200 | 1.57 | 3.51e-19 | 1.44E-15 | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 144/200 | 1.73 | 5.40e-19 | 1.34E-11 | yes |
| PG | 5 | PO:0001185 | C globular stage | 143/200 | 1.74 | 5.91e-19 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 143/200 | 1.74 | 8.92e-19 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 139/200 | 1.75 | 4.18e-18 | 1.44E-15 | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 136/200 | 1.77 | 6.32e-18 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 136/200 | 1.77 | 6.68e-18 | 6.75E-12 | yes |
| KW | 0 | regulation | - | 30/200 | 2.27 | 8.38e-06 | 1.64E-18 | no |
| KW | 0 | region | - | 29/200 | 2.01 | 1.12e-04 | 1.64E-18 | no |
| KW | 0 | transcription | - | 29/200 | 2.00 | 1.23e-04 | 1.64E-18 | no |
| KW | 0 | plasma | - | 24/200 | 2.09 | 2.11e-04 | 1.69E-15 | no |
| KW | 0 | nucleus | - | 26/200 | 2.02 | 2.25e-04 | 3.64E-21 | no |
| KW | 0 | ipr013083 | - | 10/200 | 3.19 | 3.43e-04 | - | no |
| KW | 0 | factor | - | 30/200 | 1.71 | 1.30e-03 | 1.64E-18 | no |
| KW | 0 | development | - | 15/200 | 2.15 | 1.84e-03 | 1.64E-18 | no |
| KW | 0 | ligase | - | 10/200 | 2.56 | 2.02e-03 | 6.35E-17 | no |
| KW | 0 | finger | - | 18/200 | 1.95 | 2.46e-03 | 1.64E-18 | no |
| KW | 0 | motif | - | 11/200 | 2.26 | 3.77e-03 | 1.28E-16 | no |
| KW | 0 | ubiquitin | - | 10/200 | 2.23 | 5.81e-03 | 7.67E-17 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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