OMAT5P106560http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501065600000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT3P108800 | 0.952793 | - | AT3G26900 | shikimate kinase family protein | - | - |
| OMAT3P108360 | 0.929274 | - | - | - | AT3G25690 | CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) |
| OMAT4P107835 | 0.927224 | - | AT4G28080 | binding | - | - |
| OMAT4P108110 | 0.92133 | - | - | - | AT4G29060 | emb2726 (embryo defective 2726) |
| OMAT4P100650 | 0.921127 | - | AT4G01800 | preprotein translocase secA subunit, putative | - | - |
| OMAT2P101490 | 0.918996 | - | AT2G13360 | AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) | - | - |
| OMAT5P004880 | 0.918633 | - | AT5G14260 | SET domain-containing protein | - | - |
| OMAT1P107530 | 0.913982 | - | AT1G23310 | GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE) | - | - |
| OMAT4P103300 | 0.913523 | - | AT4G14480 | protein kinase family protein | - | - |
| OMAT1P107350 | 0.909769 | - | AT1G22850 | INVOLVED IN: biological_process unknown | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P105520 | -0.907076 | - | AT5G18900 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | - | - |
| OMAT5P109290 | -0.888417 | - | AT5G39410 | binding / catalytic | - | - |
| OMAT4P009250 | -0.884765 | - | AT4G28480 | DNAJ heat shock family protein | - | - |
| OMAT5P017790 | -0.880401 | - | AT5G58640 | selenoprotein-related | - | - |
| OMAT4P009650 | -0.872642 | - | AT4G29330 | DER1 (DERLIN-1) | - | - |
| OMAT3P009350 | -0.868353 | - | AT3G24810 | ICK3 | - | - |
| OMAT3P001230 | -0.868028 | - | AT3G03773 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT5P008010 | -0.867647 | - | AT5G23575 | transmembrane protein, putative | - | - |
| OMAT4P009520 | -0.864865 | - | AT4G29040 | RPT2a (regulatory particle AAA-ATPase 2a) | - | - |
| OMAT3P108990 | -0.851399 | - | AT3G27310 | PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 3.09e-41 | :20 terms with high significance | |
| 3.09e-41 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 4 | GO:0015979 | photosynthesis | 26/200 | 32.50 | 1.22e-33 | - | no |
| B | 4 | GO:0006091 | generation of precursor metabolites and energy | 23/200 | 14.38 | 3.04e-21 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 18/200 | 6.26 | 1.13e-10 | - | no |
| B | 4 | GO:0009314 | response to radiation | 18/200 | 6.06 | 1.96e-10 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 28/200 | 3.78 | 3.71e-10 | - | no |
| B | 3 | GO:0044237 | cellular metabolic process | 84/200 | 1.78 | 2.67e-09 | - | yes |
| B | 3 | GO:0009607 | response to biotic stimulus | 16/200 | 4.43 | 1.62e-07 | - | no |
| B | 3 | GO:0051707 | response to other organism | 14/200 | 4.18 | 1.63e-06 | - | no |
| B | 3 | GO:0006950 | response to stress | 29/200 | 2.34 | 6.55e-06 | - | no |
| B | 3 | GO:0009056 | catabolic process | 16/200 | 3.35 | 6.95e-06 | - | no |
| B | 5 | GO:0043436 | oxoacid metabolic process | 15/200 | 3.41 | 1.03e-05 | - | no |
| B | 4 | GO:0006082 | organic acid metabolic process | 15/200 | 3.40 | 1.06e-05 | - | no |
| B | 4 | GO:0042180 | cellular ketone metabolic process | 15/200 | 3.34 | 1.30e-05 | - | no |
| B | 4 | GO:0006952 | defense response | 14/200 | 3.08 | 5.97e-05 | - | no |
| B | 3 | GO:0044281 | small molecule metabolic process | 21/200 | 2.34 | 1.04e-04 | - | no |
| B | 4 | GO:0044248 | cellular catabolic process | 11/200 | 3.05 | 3.03e-04 | - | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 11/200 | 2.11 | 6.45e-03 | - | yes |
| B | 3 | GO:0022414 | reproductive process | 12/200 | 1.99 | 7.92e-03 | - | yes |
| C | 5 | GO:0009536 | plastid | 125/200 | 6.77 | 4.46e-79 | 3.64E-21 | yes |
| C | 4 | GO:0044435 | plastid part | 80/200 | 14.06 | 2.11e-71 | - | no |
| C | 5 | GO:0044434 | chloroplast part | 78/200 | 14.08 | 1.57e-69 | - | no |
| C | 4 | GO:0044444 | cytoplasmic part | 135/200 | 3.89 | 1.24e-56 | - | yes |
| C | 4 | GO:0005737 | cytoplasm | 137/200 | 3.66 | 1.49e-54 | - | yes |
| C | 4 | GO:0009579 | thylakoid | 49/200 | 19.68 | 2.43e-50 | - | no |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 138/200 | 3.14 | 7.15e-47 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 138/200 | 3.14 | 7.27e-47 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 138/200 | 2.99 | 3.28e-44 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 144/200 | 2.83 | 3.31e-44 | - | yes |
| C | 4 | GO:0044436 | thylakoid part | 42/200 | 20.36 | 6.86e-44 | - | no |
| C | 3 | GO:0005622 | intracellular | 145/200 | 2.72 | 1.10e-42 | - | yes |
| C | 4 | GO:0034357 | photosynthetic membrane | 39/200 | 21.26 | 1.30e-41 | - | no |
| C | 5 | GO:0031976 | plastid thylakoid | 40/200 | 20.09 | 1.31e-41 | - | no |
| C | 4 | GO:0031984 | organelle subcompartment | 40/200 | 19.97 | 1.68e-41 | - | no |
| C | 3 | GO:0044446 | intracellular organelle part | 81/200 | 5.65 | 3.05e-41 | - | no |
| C | 3 | GO:0044422 | organelle part | 81/200 | 5.64 | 3.24e-41 | - | no |
| C | 5 | GO:0042651 | thylakoid membrane | 38/200 | 20.99 | 2.34e-40 | - | no |
| C | 5 | GO:0055035 | plastid thylakoid membrane | 37/200 | 21.36 | 1.25e-39 | - | no |
| C | 5 | GO:0009532 | plastid stroma | 37/200 | 14.97 | 1.13e-33 | - | no |
| C | 5 | GO:0009526 | plastid envelope | 37/200 | 13.46 | 6.10e-32 | - | no |
| C | 3 | GO:0044464 | cell part | 165/200 | 1.80 | 1.00e-27 | - | yes |
| C | 4 | GO:0031967 | organelle envelope | 37/200 | 8.88 | 2.51e-25 | - | no |
| C | 3 | GO:0031975 | envelope | 37/200 | 8.88 | 2.51e-25 | - | no |
| C | 3 | GO:0016020 | membrane | 68/200 | 2.48 | 6.82e-14 | - | no |
| C | 3 | GO:0048046 | apoplast | 18/200 | 9.12 | 1.63e-13 | - | no |
| C | 3 | GO:0043234 | protein complex | 21/200 | 3.21 | 7.70e-07 | - | no |
| C | 5 | GO:0005739 | mitochondrion | 17/200 | 2.66 | 8.40e-05 | - | no |
| C | 3 | GO:0044425 | membrane part | 16/200 | 2.02 | 2.61e-03 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 24/200 | 2.85 | 1.29e-06 | - | no |
| M | 3 | GO:0016740 | transferase activity | 28/200 | 1.71 | 1.84e-03 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 18/200 | 1.99 | 1.92e-03 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 18/200 | 1.99 | 1.92e-03 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 18/200 | 1.98 | 1.98e-03 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 19/200 | 1.94 | 2.09e-03 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 19/200 | 1.83 | 3.93e-03 | - | no |
| PS | 4 | PO:0020030 | cotyledon | 168/200 | 2.29 | 2.71e-44 | - | yes |
| PS | 5 | PO:0020038 | petiole | 169/200 | 2.22 | 7.19e-43 | - | yes |
| PS | 5 | PO:0000013 | cauline leaf | 168/200 | 2.17 | 5.98e-41 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 172/200 | 2.09 | 1.97e-40 | - | yes |
| PS | 3 | PO:0009013 | meristem | 167/200 | 2.08 | 1.77e-37 | - | yes |
| PS | 4 | PO:0009047 | stem | 168/200 | 1.99 | 3.11e-35 | - | yes |
| PS | 4 | PO:0009025 | leaf | 174/200 | 1.89 | 6.23e-35 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 167/200 | 1.99 | 9.53e-35 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 161/200 | 2.07 | 2.09e-34 | - | yes |
| PS | 5 | PO:0008037 | seedling | 168/200 | 1.90 | 2.40e-32 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 165/200 | 1.92 | 1.84e-31 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 168/200 | 1.87 | 4.07e-31 | - | yes |
| PS | 3 | PO:0009032 | petal | 165/200 | 1.88 | 2.48e-30 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 158/200 | 1.94 | 2.41e-29 | - | yes |
| PS | 5 | PO:0008034 | leaf whorl | 169/200 | 1.79 | 5.29e-29 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 169/200 | 1.79 | 5.29e-29 | - | yes |
| PS | 3 | PO:0009031 | sepal | 166/200 | 1.80 | 6.46e-28 | - | yes |
| PS | 3 | PO:0006001 | phyllome | 174/200 | 1.70 | 1.05e-27 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 158/200 | 1.88 | 1.63e-27 | - | yes |
| PS | 4 | PO:0009009 | embryo | 169/200 | 1.75 | 1.75e-27 | - | yes |
| PS | 3 | PO:0009010 | seed | 169/200 | 1.73 | 1.03e-26 | - | yes |
| PS | 4 | PO:0009001 | fruit | 169/200 | 1.72 | 2.17e-26 | - | yes |
| PS | 3 | PO:0006342 | infructescence | 169/200 | 1.72 | 2.17e-26 | - | yes |
| PS | 5 | PO:0009046 | flower | 171/200 | 1.64 | 1.99e-24 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 171/200 | 1.63 | 4.68e-24 | - | yes |
| PS | 3 | PO:0009006 | shoot | 174/200 | 1.60 | 4.95e-24 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 53/200 | 4.93 | 1.78e-23 | - | no |
| PS | 4 | PO:0000351 | guard mother cell | 53/200 | 4.90 | 2.19e-23 | - | no |
| PS | 3 | PO:0000070 | meristemoid | 53/200 | 4.90 | 2.37e-23 | - | no |
| PS | 5 | PO:0006016 | leaf epidermis | 53/200 | 4.77 | 8.25e-23 | - | no |
| PS | 5 | PO:0006035 | shoot epidermis | 53/200 | 4.73 | 1.14e-22 | - | no |
| PS | 5 | PO:0000349 | epidermal initial | 53/200 | 4.70 | 1.57e-22 | - | no |
| PS | 4 | PO:0004011 | initial cell | 53/200 | 4.67 | 2.11e-22 | - | no |
| PS | 3 | PO:0004010 | meristematic cell | 53/200 | 4.66 | 2.28e-22 | - | no |
| PS | 3 | PO:0020091 | male gametophyte | 149/200 | 1.80 | 4.75e-22 | - | yes |
| PS | 3 | PO:0004013 | epidermal cell | 53/200 | 4.44 | 2.06e-21 | - | no |
| PS | 4 | PO:0005679 | epidermis | 53/200 | 4.28 | 1.14e-20 | - | no |
| PS | 3 | PO:0009014 | dermal tissue | 53/200 | 4.28 | 1.17e-20 | - | no |
| PS | 3 | PO:0009005 | root | 129/200 | 1.43 | 8.93e-09 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 168/200 | 2.18 | 3.09e-41 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 168/200 | 2.18 | 3.36e-41 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 170/200 | 2.01 | 9.67e-37 | - | yes |
| PG | 5 | PO:0007133 | leaf production | 169/200 | 2.01 | 2.66e-36 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 169/200 | 2.01 | 2.75e-36 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 163/200 | 1.98 | 1.68e-32 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 160/200 | 2.01 | 3.53e-32 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 162/200 | 1.97 | 6.30e-32 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 160/200 | 1.93 | 1.13e-29 | - | yes |
| PG | 3 | PO:0001170 | seed development stages | 164/200 | 1.81 | 1.18e-27 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 163/200 | 1.81 | 3.71e-27 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 169/200 | 1.71 | 3.75e-26 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 171/200 | 1.68 | 9.90e-26 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 166/200 | 1.71 | 5.44e-25 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 171/200 | 1.63 | 5.21e-24 | - | yes |
| KW | 0 | chloroplast | - | 114/200 | 6.45 | 4.18e-68 | - | yes |
| KW | 0 | thylakoid | - | 35/200 | 16.44 | 2.12e-33 | - | no |
| KW | 0 | components | - | 28/200 | 17.24 | 1.09e-27 | - | no |
| KW | 0 | photosystem | - | 16/200 | 26.60 | 3.79e-20 | - | no |
| KW | 0 | light | - | 22/200 | 8.24 | 4.36e-15 | - | no |
| KW | 0 | stroma | - | 19/200 | 10.19 | 4.74e-15 | - | no |
| KW | 0 | envelope | - | 20/200 | 8.75 | 2.04e-14 | - | no |
| KW | 0 | phosphate | - | 17/200 | 5.61 | 1.94e-09 | - | no |
| KW | 0 | membrane | - | 56/200 | 2.10 | 1.15e-08 | - | no |
| KW | 0 | subunit | - | 25/200 | 3.41 | 2.44e-08 | - | no |
| KW | 0 | thioredoxin | - | 10/200 | 6.81 | 3.04e-07 | - | no |
| KW | 0 | encodes | - | 51/200 | 2.00 | 3.16e-07 | - | no |
| KW | 0 | catalytic | - | 28/200 | 2.75 | 3.68e-07 | - | yes |
| KW | 0 | complex | - | 24/200 | 2.83 | 1.39e-06 | - | no |
| KW | 0 | process | - | 42/200 | 2.05 | 2.05e-06 | - | no |
| KW | 0 | class | - | 19/200 | 3.17 | 2.80e-06 | - | no |
| KW | 0 | response | - | 38/200 | 2.12 | 2.95e-06 | - | no |
| KW | 0 | dehydrogenase | - | 12/200 | 4.14 | 8.04e-06 | - | no |
| KW | 0 | dependent | - | 30/200 | 2.24 | 1.09e-05 | - | no |
| KW | 0 | major | - | 11/200 | 3.85 | 3.41e-05 | - | no |
| KW | 0 | biosynthetic | - | 19/200 | 2.66 | 3.59e-05 | - | no |
| KW | 0 | enzyme | - | 12/200 | 3.56 | 3.92e-05 | - | no |
| KW | 0 | defective | - | 10/200 | 4.09 | 3.97e-05 | - | no |
| KW | 0 | defense | - | 12/200 | 3.44 | 5.50e-05 | - | no |
| KW | 0 | region | - | 29/200 | 2.01 | 1.12e-04 | - | no |
| KW | 0 | atpase | - | 11/200 | 3.12 | 2.45e-04 | - | no |
| KW | 0 | electron | - | 11/200 | 3.09 | 2.68e-04 | - | no |
| KW | 0 | mitochondrion | - | 13/200 | 2.37 | 1.33e-03 | - | no |
| KW | 0 | hydrolase | - | 14/200 | 1.92 | 6.85e-03 | - | no |
| KW | 0 | active | - | 15/200 | 1.83 | 8.41e-03 | - | no |
| KW | 0 | transferase | - | 12/200 | 1.96 | 9.10e-03 | - | no |
| KW | 0 | transport | - | 17/200 | 1.75 | 9.14e-03 | - | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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