ARTADE2 予測遺伝子モデル データベースARTADE2_Gene (Ver.20100511)

OMAT5P113980
http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501139800000i

OMAT5P113980(↑ Click "Links", if this line appears at the beginning.)

Other supporting information

Gene Model

Correlation Plot


Expression profile (Values are plotted in Log(2) values.)

Genes with related expresssion profiles.
Positively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
OMAT4P0056900.999559-AT4G18660unknown protein--
OMAT4P0030200.999084-AT4G11910,AT4G11911[AT4G11910]INVOLVED IN: biological_process unknown, [AT4G11911]FUNCTIONS IN: molecular_function unknown--
OMAT1P0221700.99806-AT1G75830LCR67--
OMAT2P0054900.997472-AT2G25890glycine-rich protein / oleosin--
OMAT3P1103700.996847-AT3G46230ATHSP17.4AT3G46220unknown protein
OMAT4P1113300.996736---AT4G37420unknown protein
OMAT5P1096900.996724-AT5G40840SYN2--
OMAT4P1013400.995308-AT4G04870CLS (CARDIOLIPIN SYNTHASE)--
OMAT5P0095800.995067-AT5G30500galactinol synthase, putative--
OMAT3P1097500.99487-AT3G42860zinc knuckle (CCHC-type) family protein--
Negatively Correlated Genes
GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
OMAT3P012480-0.837136-AT3G48140senescence-associated protein, putative--
OMAT5P102370-0.817124-AT5G08530CI51 (51 kDa subunit of complex I)--
OMAT4P110151-0.774824-AT4G34720AVA-P1--
OMAT2P110810-0.768693-AT2G42500PP2A-4--
OMAT1P116670-0.755769-AT1G67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)--
OMAT3P112500-0.755236-AT3G52880monodehydroascorbate reductase, putative--
OMAT1P007430-0.743539-AT1G20260hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism--
OMAT3P113330-0.722778-AT3G55020RabGAP/TBC domain-containing protein--
OMAT1P108120-0.720339-AT1G25570leucine-rich repeat protein-related--
OMAT2P001450-0.720122-AT2G07050CAS1 (cycloartenol synthase 1)--

Get whole results

Over-Representation Analysis Result

p-value <= 1.00e-06:20 terms with high significance
1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
p <= 1.00e-02 / 1142
8.76e-06 < p-value <= 1.00e-02

Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
(Link to PosMed)		Found on gene annotation
B5GO:0006350transcription23/2002.259.27e-05-no
B5GO:0010556regulation of macromolecule biosynthetic process22/2002.231.45e-04-no
B5GO:0010468regulation of gene expression23/2002.161.78e-04-no
B5GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process22/2002.191.88e-04-no
B5GO:0031326regulation of cellular biosynthetic process22/2002.191.92e-04-no
B4GO:0009889regulation of biosynthetic process22/2002.191.92e-04-no
B4GO:0051171regulation of nitrogen compound metabolic process22/2002.172.17e-04-no
B4GO:0060255regulation of macromolecule metabolic process23/2002.102.64e-04-no
B4GO:0080090regulation of primary metabolic process22/2002.093.77e-04-no
B4GO:0031323regulation of cellular metabolic process22/2002.035.43e-04-no
B3GO:0019222regulation of metabolic process23/2001.957.47e-04-no
B5GO:0090304nucleic acid metabolic process26/2001.732.23e-03-no
B3GO:0007275multicellular organismal development20/2001.882.32e-03-no
B3GO:0009791post-embryonic development13/2002.202.66e-03-no
B3GO:0050794regulation of cellular process26/2001.702.75e-03-no
B4GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process28/2001.662.92e-03-no
B4GO:0048608reproductive structure development11/2002.263.88e-03-no
B3GO:0050789regulation of biological process28/2001.624.16e-03-no
B5GO:0051252regulation of RNA metabolic process11/2002.106.63e-03-no
B5GO:0032774RNA biosynthetic process11/2002.019.43e-03-no
B3GO:0003006reproductive developmental process11/2002.009.82e-03-no
M3GO:0003700transcription factor activity22/2002.182.08e-04-no
M4GO:0003677DNA binding27/2001.953.01e-04-no
PS3PO:0000084sperm cell51/2001.572.76e-04-no
PS3PO:0020097generative cell51/2001.572.76e-04-no
PS3PO:0009006shoot131/2001.214.89e-04-no
PS4PO:0009049inflorescence126/2001.209.02e-04-no
PS5PO:0009046flower125/2001.201.09e-03-no
PS3PO:0006001phyllome122/2001.192.24e-03-no
PS4PO:0009026sporophyll109/2001.212.80e-03-no
PS4PO:0009047stem103/2001.223.15e-03-no
PS5PO:0009028microsporophyll102/2001.223.88e-03-no
PS3PO:0009010seed115/2001.186.06e-03-no
PS4PO:0009001fruit115/2001.177.42e-03-no
PS3PO:0006342infructescence115/2001.177.42e-03-no
PG3PO:0007615flower development stages126/2001.209.36e-04-no
PG4PO:00076003 floral organ development stages123/2001.211.03e-03-no
PG5PO:0007604corolla developmental stages119/2001.211.57e-03-no
PG4PO:00076164 anthesis113/2001.179.49e-03-no
KW0shock-12/2006.406.27e-08-no
KW0petal-33/2002.263.29e-06-no
KW0expansion-33/2002.253.86e-06-no
KW0cellular_component-76/2001.566.14e-06-yes
KW0differentiation-33/2002.187.07e-06-no
KW0stage-38/2001.961.77e-05-no
KW0molecular_function-76/2001.512.36e-05-no
KW0biological_process-84/2001.419.93e-05-yes
KW0anthesis-27/2002.051.27e-04-no
KW0development-17/2002.442.43e-04-no
KW0transcription-28/2001.932.86e-04-no
KW0regulation-26/2001.973.31e-04-no
KW0nucleus-23/2001.782.53e-03-no
KW0factor-29/2001.662.57e-03-no
KW0cotyledon-12/2002.282.60e-03-no
(*1)[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
(*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
(*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
(*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
Top Page

OMAT5P113980

ARTADE2_Gene (Ver.20100511)

status_about_related_gene
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s43i
  • with_AGI_gene
Correlation_Score
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s9i
  • 0.868813
description
http://purl.org/dc/elements/1.1/description
  • OMAT5P113980(↑ Click "Links", if this line appears at the beginning.)

    Other supporting information

    Gene Model

    Correlation Plot


    Expression profile (Values are plotted in Log(2) values.)

    Genes with related expresssion profiles.
    Positively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    OMAT4P0056900.999559-AT4G18660unknown protein--
    OMAT4P0030200.999084-AT4G11910,AT4G11911[AT4G11910]INVOLVED IN: biological_process unknown, [AT4G11911]FUNCTIONS IN: molecular_function unknown--
    OMAT1P0221700.99806-AT1G75830LCR67--
    OMAT2P0054900.997472-AT2G25890glycine-rich protein / oleosin--
    OMAT3P1103700.996847-AT3G46230ATHSP17.4AT3G46220unknown protein
    OMAT4P1113300.996736---AT4G37420unknown protein
    OMAT5P1096900.996724-AT5G40840SYN2--
    OMAT4P1013400.995308-AT4G04870CLS (CARDIOLIPIN SYNTHASE)--
    OMAT5P0095800.995067-AT5G30500galactinol synthase, putative--
    OMAT3P1097500.99487-AT3G42860zinc knuckle (CCHC-type) family protein--
    Negatively Correlated Genes
    GensPCCDefinitionOverlap geneDefinitionOverlap gene(antisense)Definition
    OMAT3P012480-0.837136-AT3G48140senescence-associated protein, putative--
    OMAT5P102370-0.817124-AT5G08530CI51 (51 kDa subunit of complex I)--
    OMAT4P110151-0.774824-AT4G34720AVA-P1--
    OMAT2P110810-0.768693-AT2G42500PP2A-4--
    OMAT1P116670-0.755769-AT1G67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)--
    OMAT3P112500-0.755236-AT3G52880monodehydroascorbate reductase, putative--
    OMAT1P007430-0.743539-AT1G20260hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism--
    OMAT3P113330-0.722778-AT3G55020RabGAP/TBC domain-containing protein--
    OMAT1P108120-0.720339-AT1G25570leucine-rich repeat protein-related--
    OMAT2P001450-0.720122-AT2G07050CAS1 (cycloartenol synthase 1)--

    Get whole results

    Over-Representation Analysis Result

    p-value <= 1.00e-06:20 terms with high significance
    1.00e-06 < p-value <= 8.76e-06 :With considering multiple testing correction;
    p <= 1.00e-02 / 1142
    8.76e-06 < p-value <= 1.00e-02

    Type of term (*1)Depth of the term in ontology treeID/TermDescriptionNumber of genesOver-Representative rate (*2)p-value (*3)PosMed p-value (*4)
    (Link to PosMed)    		Found on gene annotation
    B5GO:0006350transcription23/2002.259.27e-05-no
    B5GO:0010556regulation of macromolecule biosynthetic process22/2002.231.45e-04-no
    B5GO:0010468regulation of gene expression23/2002.161.78e-04-no
    B5GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process22/2002.191.88e-04-no
    B5GO:0031326regulation of cellular biosynthetic process22/2002.191.92e-04-no
    B4GO:0009889regulation of biosynthetic process22/2002.191.92e-04-no
    B4GO:0051171regulation of nitrogen compound metabolic process22/2002.172.17e-04-no
    B4GO:0060255regulation of macromolecule metabolic process23/2002.102.64e-04-no
    B4GO:0080090regulation of primary metabolic process22/2002.093.77e-04-no
    B4GO:0031323regulation of cellular metabolic process22/2002.035.43e-04-no
    B3GO:0019222regulation of metabolic process23/2001.957.47e-04-no
    B5GO:0090304nucleic acid metabolic process26/2001.732.23e-03-no
    B3GO:0007275multicellular organismal development20/2001.882.32e-03-no
    B3GO:0009791post-embryonic development13/2002.202.66e-03-no
    B3GO:0050794regulation of cellular process26/2001.702.75e-03-no
    B4GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process28/2001.662.92e-03-no
    B4GO:0048608reproductive structure development11/2002.263.88e-03-no
    B3GO:0050789regulation of biological process28/2001.624.16e-03-no
    B5GO:0051252regulation of RNA metabolic process11/2002.106.63e-03-no
    B5GO:0032774RNA biosynthetic process11/2002.019.43e-03-no
    B3GO:0003006reproductive developmental process11/2002.009.82e-03-no
    M3GO:0003700transcription factor activity22/2002.182.08e-04-no
    M4GO:0003677DNA binding27/2001.953.01e-04-no
    PS3PO:0000084sperm cell51/2001.572.76e-04-no
    PS3PO:0020097generative cell51/2001.572.76e-04-no
    PS3PO:0009006shoot131/2001.214.89e-04-no
    PS4PO:0009049inflorescence126/2001.209.02e-04-no
    PS5PO:0009046flower125/2001.201.09e-03-no
    PS3PO:0006001phyllome122/2001.192.24e-03-no
    PS4PO:0009026sporophyll109/2001.212.80e-03-no
    PS4PO:0009047stem103/2001.223.15e-03-no
    PS5PO:0009028microsporophyll102/2001.223.88e-03-no
    PS3PO:0009010seed115/2001.186.06e-03-no
    PS4PO:0009001fruit115/2001.177.42e-03-no
    PS3PO:0006342infructescence115/2001.177.42e-03-no
    PG3PO:0007615flower development stages126/2001.209.36e-04-no
    PG4PO:00076003 floral organ development stages123/2001.211.03e-03-no
    PG5PO:0007604corolla developmental stages119/2001.211.57e-03-no
    PG4PO:00076164 anthesis113/2001.179.49e-03-no
    KW0shock-12/2006.406.27e-08-no
    KW0petal-33/2002.263.29e-06-no
    KW0expansion-33/2002.253.86e-06-no
    KW0cellular_component-76/2001.566.14e-06-yes
    KW0differentiation-33/2002.187.07e-06-no
    KW0stage-38/2001.961.77e-05-no
    KW0molecular_function-76/2001.512.36e-05-no
    KW0biological_process-84/2001.419.93e-05-yes
    KW0anthesis-27/2002.051.27e-04-no
    KW0development-17/2002.442.43e-04-no
    KW0transcription-28/2001.932.86e-04-no
    KW0regulation-26/2001.973.31e-04-no
    KW0nucleus-23/2001.782.53e-03-no
    KW0factor-29/2001.662.57e-03-no
    KW0cotyledon-12/2002.282.60e-03-no
    (*1)[B]:Biological process(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.
    (*2)([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes])
    (*3)P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes.
    (*4)PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.
    Top Page
label
http://www.w3.org/2000/01/rdf-schema#label
  • OMAT5P113980
attributionURL
http://creativecommons.org/ns#attributionURL
gene_region
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s6i
seeAlso
http://www.w3.org/2000/01/rdf-schema#seeAlso
Target_TAIR_Locus
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s3i
Relative_gene_Analysis_result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s5i
hasFile
http://metadb.riken.jp/meta/1.0/hasFile
Relative_ontology_term
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s40i
Tiling_Array_Analysis_Result
http://metadb.riken.jp/db/SciNetS_ria227i/pria227s1i