OMAT5P115620http://metadb.riken.jp/db/SciNetS_ria227i/cria227s1ria227u501156200000i
Other supporting information
| Gene Model | |
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| Correlation Plot | |
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Expression profile (Values are plotted in Log(2) values.)
Genes with related expresssion profiles.
| Positively Correlated Genes | ||||||
|---|---|---|---|---|---|---|
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT1P110850 | 0.858044 | - | AT1G35560 | TCP family transcription factor, putative | - | - |
| OMAT5P109230 | 0.839824 | - | - | - | AT5G38980 | unknown protein |
| OMAT5P017150 | 0.834442 | - | AT5G57340 | unknown protein | - | - |
| OMAT2P100680 | 0.831401 | - | AT2G03310 | unknown protein | - | - |
| OMAT5P002620 | 0.821383 | - | AT5G07690 | ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29) | - | - |
| OMAT3P009170 | 0.819063 | - | AT3G24190 | ABC1 family protein | - | - |
| OMAT3P002280 | 0.816292 | - | AT3G06470 | GNS1/SUR4 membrane family protein | - | - |
| OMAT5P103120 | 0.813936 | - | AT5G11242,AT5G11250 | [AT5G11242]pseudogene of ribosomal protein, [AT5G11250]disease resistance protein (TIR-NBS-LRR class), putative | - | - |
| OMAT2P006730 | 0.808021 | - | AT2G29320 | tropinone reductase, putative / tropine dehydrogenase, putative | - | - |
| OMAT5P108850 | 0.805033 | - | AT5G36930 | disease resistance protein (TIR-NBS-LRR class), putative | - | - |
| Negatively Correlated Genes | ||||||
| Gens | PCC | Definition | Overlap gene | Definition | Overlap gene(antisense) | Definition |
| OMAT5P109880 | -0.751709 | - | AT5G41610 | ATCHX18 | AT5G41612 | other RNA |
| OMAT1P020660 | -0.745746 | - | AT1G71940 | FUNCTIONS IN: molecular_function unknown | - | - |
| OMAT1P008350 | -0.732353 | - | AT1G22800 | methyltransferase | - | - |
| OMAT5P109290 | -0.720813 | - | AT5G39410 | binding / catalytic | - | - |
| OMAT2P103360 | -0.713214 | - | AT2G21060 | ATGRP2B (GLYCINE-RICH PROTEIN 2B) | - | - |
| OMAT3P013350 | -0.704462 | - | AT3G50360 | ATCEN2 (CENTRIN2) | - | - |
| OMAT1P001820 | -0.700992 | - | AT1G05780 | unknown protein | - | - |
| OMAT2P007070 | -0.691426 | - | AT2G30130 | ASL5 | - | - |
| OMAT4P002220 | -0.689817 | - | AT4G09030 | AGP10 (ARABINOGALACTAN PROTEIN 10) | - | - |
| OMAT1P019760 | -0.689431 | - | AT1G69600 | ZFHD1 (ZINC FINGER HOMEODOMAIN 1) | - | - |
Get whole results
Over-Representation Analysis Result
| p-value | <= 4.25e-26 | :20 terms with high significance | |
| 4.25e-26 < | p-value | <= 8.76e-06 | :With considering multiple testing correction; p <= 1.00e-02 / 1142 |
| 8.76e-06 < | p-value | <= 1.00e-02 |
| Type of term (*1) | Depth of the term in ontology tree | ID/Term | Description | Number of genes | Over-Representative rate (*2) | p-value (*3) | PosMed p-value (*4) (Link to PosMed) | Found on gene annotation |
|---|---|---|---|---|---|---|---|---|
| B | 3 | GO:0008219 | cell death | 16/200 | 11.04 | 1.34e-13 | 3.69E-16 | no |
| B | 4 | GO:0012501 | programmed cell death | 15/200 | 11.99 | 1.89e-13 | - | no |
| B | 4 | GO:0015979 | photosynthesis | 10/200 | 12.50 | 5.62e-10 | 2.56E-17 | no |
| B | 4 | GO:0006952 | defense response | 21/200 | 4.61 | 1.35e-09 | 7.98E-11 | no |
| B | 3 | GO:0006950 | response to stress | 36/200 | 2.90 | 2.09e-09 | 2.13E-16 | no |
| B | 4 | GO:0045087 | innate immune response | 13/200 | 7.33 | 3.71e-09 | - | no |
| B | 3 | GO:0006955 | immune response | 13/200 | 6.86 | 8.54e-09 | - | no |
| B | 4 | GO:0006091 | generation of precursor metabolites and energy | 12/200 | 7.50 | 9.59e-09 | - | no |
| B | 4 | GO:0006790 | sulfur metabolic process | 10/200 | 9.45 | 1.09e-08 | - | no |
| B | 5 | GO:0006796 | phosphate metabolic process | 22/200 | 3.31 | 2.52e-07 | - | no |
| B | 4 | GO:0006793 | phosphorus metabolic process | 22/200 | 3.31 | 2.56e-07 | - | no |
| B | 4 | GO:0044262 | cellular carbohydrate metabolic process | 13/200 | 4.21 | 3.20e-06 | - | no |
| B | 3 | GO:0050789 | regulation of biological process | 37/200 | 2.14 | 3.22e-06 | 3.71E-11 | no |
| B | 3 | GO:0044237 | cellular metabolic process | 74/200 | 1.57 | 7.34e-06 | - | no |
| B | 5 | GO:0009416 | response to light stimulus | 12/200 | 4.17 | 7.36e-06 | - | no |
| B | 4 | GO:0009314 | response to radiation | 12/200 | 4.04 | 1.04e-05 | - | no |
| B | 3 | GO:0050794 | regulation of cellular process | 31/200 | 2.03 | 5.34e-05 | 3.71E-11 | no |
| B | 4 | GO:0005975 | carbohydrate metabolic process | 15/200 | 2.88 | 7.70e-05 | - | no |
| B | 5 | GO:0006464 | protein modification process | 23/200 | 2.21 | 1.25e-04 | - | no |
| B | 4 | GO:0007165 | signal transduction | 10/200 | 3.48 | 1.64e-04 | - | no |
| B | 3 | GO:0009628 | response to abiotic stimulus | 18/200 | 2.43 | 1.76e-04 | - | no |
| B | 3 | GO:0009607 | response to biotic stimulus | 11/200 | 3.04 | 3.07e-04 | - | no |
| B | 4 | GO:0043412 | macromolecule modification | 23/200 | 2.03 | 4.41e-04 | - | no |
| B | 3 | GO:0023046 | signaling process | 10/200 | 3.08 | 4.55e-04 | - | no |
| B | 3 | GO:0023060 | signal transmission | 10/200 | 3.08 | 4.55e-04 | - | no |
| B | 3 | GO:0051707 | response to other organism | 10/200 | 2.99 | 5.97e-04 | - | no |
| B | 3 | GO:0044238 | primary metabolic process | 69/200 | 1.39 | 7.71e-04 | - | yes |
| B | 3 | GO:0009791 | post-embryonic development | 13/200 | 2.20 | 2.66e-03 | - | no |
| B | 4 | GO:0031323 | regulation of cellular metabolic process | 20/200 | 1.85 | 2.86e-03 | - | no |
| B | 3 | GO:0019222 | regulation of metabolic process | 20/200 | 1.70 | 7.47e-03 | - | no |
| B | 3 | GO:0009056 | catabolic process | 10/200 | 2.10 | 8.89e-03 | - | yes |
| C | 5 | GO:0009536 | plastid | 57/200 | 3.09 | 1.30e-15 | 2.48E-21 | yes |
| C | 4 | GO:0005737 | cytoplasm | 76/200 | 2.03 | 4.72e-11 | 2.55E-16 | yes |
| C | 4 | GO:0044444 | cytoplasmic part | 71/200 | 2.04 | 2.03e-10 | - | yes |
| C | 4 | GO:0043231 | intracellular membrane-bounded organelle | 81/200 | 1.84 | 1.06e-09 | - | yes |
| C | 3 | GO:0043227 | membrane-bounded organelle | 81/200 | 1.84 | 1.07e-09 | - | yes |
| C | 3 | GO:0044424 | intracellular part | 87/200 | 1.71 | 9.27e-09 | - | yes |
| C | 3 | GO:0043229 | intracellular organelle | 81/200 | 1.75 | 1.22e-08 | - | yes |
| C | 3 | GO:0044464 | cell part | 130/200 | 1.42 | 1.34e-08 | 2.86E-16 | yes |
| C | 3 | GO:0005622 | intracellular | 89/200 | 1.67 | 1.59e-08 | 8.12E-16 | yes |
| C | 5 | GO:0044434 | chloroplast part | 19/200 | 3.43 | 8.53e-07 | 1.25E-18 | no |
| C | 4 | GO:0044435 | plastid part | 19/200 | 3.34 | 1.29e-06 | - | no |
| C | 3 | GO:0016020 | membrane | 50/200 | 1.83 | 6.09e-06 | 1.96E-15 | no |
| C | 4 | GO:0031224 | intrinsic to membrane | 14/200 | 2.61 | 3.53e-04 | - | no |
| C | 5 | GO:0005773 | vacuole | 10/200 | 2.90 | 7.64e-04 | - | no |
| C | 3 | GO:0044425 | membrane part | 17/200 | 2.15 | 1.05e-03 | 9.16E-17 | no |
| M | 4 | GO:0004872 | receptor activity | 12/200 | 10.23 | 2.20e-10 | - | no |
| M | 5 | GO:0016301 | kinase activity | 28/200 | 3.48 | 2.42e-09 | - | no |
| M | 3 | GO:0004871 | signal transducer activity | 14/200 | 6.22 | 9.81e-09 | - | no |
| M | 4 | GO:0016772 | transferase activity, transferring phosphorus-containing groups | 29/200 | 3.16 | 1.14e-08 | - | no |
| M | 3 | GO:0000166 | nucleotide binding | 35/200 | 2.65 | 3.65e-08 | - | no |
| M | 5 | GO:0030554 | adenyl nucleotide binding | 27/200 | 2.98 | 1.16e-07 | - | no |
| M | 4 | GO:0001883 | purine nucleoside binding | 27/200 | 2.98 | 1.16e-07 | - | no |
| M | 3 | GO:0001882 | nucleoside binding | 27/200 | 2.98 | 1.23e-07 | - | no |
| M | 3 | GO:0016740 | transferase activity | 38/200 | 2.32 | 3.00e-07 | - | no |
| M | 5 | GO:0032555 | purine ribonucleotide binding | 27/200 | 2.75 | 6.01e-07 | - | no |
| M | 4 | GO:0032553 | ribonucleotide binding | 27/200 | 2.75 | 6.01e-07 | - | no |
| M | 4 | GO:0017076 | purine nucleotide binding | 27/200 | 2.60 | 1.79e-06 | - | no |
| M | 5 | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 19/200 | 3.06 | 4.75e-06 | - | no |
| M | 3 | GO:0005515 | protein binding | 31/200 | 1.98 | 8.59e-05 | 9.00E-45 | no |
| M | 3 | GO:0003700 | transcription factor activity | 20/200 | 1.98 | 1.26e-03 | - | no |
| M | 3 | GO:0016491 | oxidoreductase activity | 16/200 | 1.90 | 4.96e-03 | - | no |
| M | 5 | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 10/200 | 2.25 | 5.42e-03 | - | yes |
| M | 4 | GO:0016817 | hydrolase activity, acting on acid anhydrides | 10/200 | 2.23 | 5.81e-03 | - | yes |
| M | 3 | GO:0016787 | hydrolase activity | 25/200 | 1.60 | 7.24e-03 | - | yes |
| PS | 4 | PO:0020030 | cotyledon | 162/200 | 2.21 | 1.00e-38 | 4.99E-18 | yes |
| PS | 5 | PO:0000013 | cauline leaf | 164/200 | 2.12 | 2.55e-37 | - | yes |
| PS | 3 | PO:0009013 | meristem | 165/200 | 2.05 | 1.01e-35 | 5.93E-18 | yes |
| PS | 5 | PO:0020038 | petiole | 161/200 | 2.12 | 1.21e-35 | - | yes |
| PS | 4 | PO:0000230 | inflorescence meristem | 161/200 | 2.07 | 2.09e-34 | - | yes |
| PS | 5 | PO:0020039 | leaf lamina | 165/200 | 2.00 | 4.02e-34 | - | yes |
| PS | 4 | PO:0009047 | stem | 166/200 | 1.97 | 1.62e-33 | - | yes |
| PS | 5 | PO:0008037 | seedling | 168/200 | 1.90 | 2.40e-32 | 1.16E-17 | yes |
| PS | 4 | PO:0009025 | leaf | 171/200 | 1.86 | 2.84e-32 | 2.48E-21 | yes |
| PS | 5 | PO:0008034 | leaf whorl | 168/200 | 1.78 | 3.31e-28 | - | yes |
| PS | 4 | PO:0008033 | phyllome whorl | 168/200 | 1.78 | 3.31e-28 | - | yes |
| PS | 5 | PO:0009028 | microsporophyll | 157/200 | 1.87 | 7.42e-27 | - | yes |
| PS | 4 | PO:0000037 | shoot apex | 159/200 | 1.85 | 7.56e-27 | - | yes |
| PS | 4 | PO:0009009 | embryo | 168/200 | 1.74 | 1.04e-26 | 7.98E-11 | yes |
| PS | 3 | PO:0006001 | phyllome | 172/200 | 1.68 | 4.25e-26 | - | yes |
| PS | 3 | PO:0009010 | seed | 168/200 | 1.72 | 6.02e-26 | - | yes |
| PS | 4 | PO:0009026 | sporophyll | 161/200 | 1.79 | 1.01e-25 | - | yes |
| PS | 4 | PO:0009001 | fruit | 168/200 | 1.71 | 1.25e-25 | 7.98E-11 | yes |
| PS | 3 | PO:0006342 | infructescence | 168/200 | 1.71 | 1.25e-25 | - | yes |
| PS | 5 | PO:0009046 | flower | 169/200 | 1.62 | 5.92e-23 | - | yes |
| PS | 3 | PO:0009031 | sepal | 159/200 | 1.72 | 7.16e-23 | - | yes |
| PS | 4 | PO:0009049 | inflorescence | 169/200 | 1.61 | 1.36e-22 | - | yes |
| PS | 3 | PO:0009006 | shoot | 172/200 | 1.58 | 1.57e-22 | 1.15E-17 | yes |
| PS | 3 | PO:0009032 | petal | 153/200 | 1.75 | 9.26e-22 | - | yes |
| PS | 5 | PO:0009027 | megasporophyll | 142/200 | 1.69 | 2.37e-17 | - | yes |
| PS | 5 | PO:0009052 | pedicel | 129/200 | 1.59 | 2.89e-12 | - | yes |
| PS | 3 | PO:0020091 | male gametophyte | 129/200 | 1.56 | 1.48e-11 | - | yes |
| PS | 3 | PO:0009005 | root | 119/200 | 1.32 | 1.36e-05 | 3.00E-25 | yes |
| PS | 4 | PO:0005679 | epidermis | 24/200 | 1.94 | 6.61e-04 | - | yes |
| PS | 3 | PO:0009014 | dermal tissue | 24/200 | 1.94 | 6.65e-04 | - | yes |
| PS | 5 | PO:0006016 | leaf epidermis | 22/200 | 1.98 | 7.94e-04 | - | yes |
| PS | 5 | PO:0006035 | shoot epidermis | 22/200 | 1.96 | 8.72e-04 | - | yes |
| PS | 3 | PO:0004013 | epidermal cell | 23/200 | 1.93 | 8.89e-04 | - | yes |
| PS | 4 | PO:0000293 | guard cell | 21/200 | 1.95 | 1.20e-03 | - | yes |
| PS | 4 | PO:0000351 | guard mother cell | 21/200 | 1.94 | 1.27e-03 | - | yes |
| PS | 3 | PO:0000070 | meristemoid | 21/200 | 1.94 | 1.29e-03 | - | yes |
| PS | 5 | PO:0000349 | epidermal initial | 21/200 | 1.86 | 2.15e-03 | - | yes |
| PS | 4 | PO:0004011 | initial cell | 21/200 | 1.85 | 2.33e-03 | - | yes |
| PS | 3 | PO:0004010 | meristematic cell | 21/200 | 1.85 | 2.37e-03 | - | yes |
| PG | 4 | PO:0001054 | 4 leaf senescence stage | 164/200 | 2.13 | 1.36e-37 | - | yes |
| PG | 3 | PO:0001050 | leaf development stages | 164/200 | 2.13 | 1.47e-37 | 7.98E-11 | yes |
| PG | 5 | PO:0007133 | leaf production | 167/200 | 1.99 | 1.51e-34 | - | yes |
| PG | 4 | PO:0007112 | 1 main shoot growth | 167/200 | 1.98 | 1.56e-34 | - | yes |
| PG | 3 | PO:0007134 | A vegetative growth | 167/200 | 1.97 | 4.22e-34 | - | yes |
| PG | 5 | PO:0007604 | corolla developmental stages | 166/200 | 1.68 | 6.27e-24 | - | yes |
| PG | 4 | PO:0007600 | 3 floral organ development stages | 167/200 | 1.64 | 8.91e-23 | - | yes |
| PG | 3 | PO:0007615 | flower development stages | 169/200 | 1.61 | 1.51e-22 | - | yes |
| PG | 5 | PO:0001081 | F mature embryo stage | 146/200 | 1.84 | 3.10e-22 | - | yes |
| PG | 4 | PO:0007616 | 4 anthesis | 162/200 | 1.67 | 3.51e-22 | - | yes |
| PG | 4 | PO:0007631 | embryo development stages | 155/200 | 1.72 | 1.29e-21 | 7.98E-11 | yes |
| PG | 3 | PO:0001170 | seed development stages | 155/200 | 1.71 | 2.17e-21 | - | yes |
| PG | 5 | PO:0004507 | D bilateral stage | 147/200 | 1.78 | 3.84e-21 | - | yes |
| PG | 5 | PO:0001078 | E expanded cotyledon stage | 145/200 | 1.75 | 1.42e-19 | - | yes |
| PG | 5 | PO:0001185 | C globular stage | 136/200 | 1.66 | 3.35e-15 | 7.78E-19 | yes |
| KW | 0 | chloroplast | - | 60/200 | 3.40 | 1.95e-18 | 2.00E-97 | yes |
| KW | 0 | ipr002182 | - | 17/200 | 17.89 | 5.02e-18 | - | no |
| KW | 0 | class | - | 30/200 | 5.01 | 6.71e-14 | 5.06E-16 | no |
| KW | 0 | disease | - | 17/200 | 9.71 | 2.39e-13 | - | no |
| KW | 0 | resistance | - | 20/200 | 7.03 | 1.40e-12 | 1.11E-15 | no |
| KW | 0 | light | - | 19/200 | 7.12 | 3.77e-12 | 5.84E-16 | no |
| KW | 0 | response | - | 50/200 | 2.79 | 4.86e-12 | 3.49E-15 | no |
| KW | 0 | defense | - | 20/200 | 5.73 | 6.31e-11 | 7.98E-11 | no |
| KW | 0 | ipr001611 | - | 18/200 | 6.37 | 8.48e-11 | - | no |
| KW | 0 | ipr000157 | - | 10/200 | 11.96 | 9.02e-10 | - | no |
| KW | 0 | interleukin | - | 10/200 | 11.96 | 9.02e-10 | - | no |
| KW | 0 | apoptosis | - | 10/200 | 11.16 | 1.89e-09 | - | no |
| KW | 0 | leucine | - | 21/200 | 4.00 | 1.77e-08 | - | no |
| KW | 0 | kinase | - | 30/200 | 2.84 | 7.28e-08 | - | no |
| KW | 0 | ipr017441 | - | 18/200 | 4.19 | 7.59e-08 | - | no |
| KW | 0 | ipr017442 | - | 20/200 | 3.80 | 8.81e-08 | - | no |
| KW | 0 | ipr008271 | - | 19/200 | 3.89 | 1.18e-07 | - | no |
| KW | 0 | ipr011009 | - | 22/200 | 3.40 | 1.58e-07 | - | no |
| KW | 0 | ipr000719 | - | 21/200 | 3.37 | 3.40e-07 | - | no |
| KW | 0 | phosphorylation | - | 20/200 | 3.25 | 1.08e-06 | 5.50E-16 | no |
| KW | 0 | receptor | - | 17/200 | 3.57 | 1.61e-06 | 3.14E-11 | no |
| KW | 0 | active | - | 23/200 | 2.81 | 2.59e-06 | 1.35E-15 | no |
| KW | 0 | putative | - | 45/200 | 1.95 | 3.42e-06 | 2.87E-16 | no |
| KW | 0 | serine | - | 24/200 | 2.69 | 3.44e-06 | 3.52E-16 | no |
| KW | 0 | threonine | - | 21/200 | 2.80 | 6.93e-06 | - | no |
| KW | 0 | membrane | - | 48/200 | 1.80 | 1.35e-05 | 1.96E-15 | no |
| KW | 0 | transmembrane | - | 20/200 | 2.76 | 1.40e-05 | - | no |
| KW | 0 | atpase | - | 13/200 | 3.69 | 1.41e-05 | 0 | yes |
| KW | 0 | repeat | - | 29/200 | 2.23 | 1.59e-05 | - | no |
| KW | 0 | stimulus | - | 13/200 | 3.02 | 1.21e-04 | - | no |
| KW | 0 | transduction | - | 11/200 | 3.33 | 1.37e-04 | - | no |
| KW | 0 | signal | - | 13/200 | 2.96 | 1.48e-04 | 2.00E-73 | no |
| KW | 0 | vacuole | - | 10/200 | 3.17 | 3.60e-04 | - | no |
| KW | 0 | encodes | - | 42/200 | 1.65 | 3.84e-04 | 1.59E-16 | yes |
| KW | 0 | amino | - | 19/200 | 2.21 | 4.29e-04 | 1.80E-15 | no |
| KW | 0 | region | - | 27/200 | 1.87 | 5.86e-04 | 6.00E-30 | no |
| KW | 0 | tyrosine | - | 10/200 | 2.82 | 9.54e-04 | - | no |
| KW | 0 | process | - | 34/200 | 1.66 | 1.15e-03 | 9.34E-16 | yes |
| KW | 0 | expression | - | 12/200 | 2.48 | 1.24e-03 | - | no |
| KW | 0 | nucleotide | - | 13/200 | 2.04 | 5.02e-03 | 7.98E-11 | no |
| KW | 0 | regulation | - | 22/200 | 1.66 | 6.91e-03 | 1.97E-15 | no |
| (*1) | [B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description. |
| (*2) | ([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) |
| (*3) | P-values were calculated on hypergeometric distribution in which we found n genes with a annotation term during 200 highly correlated genes, while we had N genes with the term in the whole genes. |
| (*4) | PosMed is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions. |
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